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This study is part of submission (Status: ).
Analyses
Analysis 1
Analysis details
Name
Notes
Input data
1 Input object(s)
Evolution fruit-bird ornitophyly Mirtaceae ITS-ETS-psbA-matK
Analysis step
Bayesian Inference --
Step details
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Algorithm
--- Please Select ---
maximum likelihood
parsimony
bayesian inference
minimum evolution
neighbor joining
UPGMA
other algorithm
Commands
begin mrbayes; outgroup Acmena_smithii; charset matK = 1-683; charset psbA = 684-1071; charset ITS1 = 1072-1340; charset 5.8s = 1341-1507; charset ITS2 = 1508-1759; charset ETS = 1760-2383; partition favored = 6: matK, psbA, ITS1, 5.8s, ITS2, ETS; set partition = favored; set autoclose=yes nowarn=yes; lset app=(1) rates=gamma nst=6; lset app=(2) rates=invgamma nst=6; lset app=(3) rates=invgamma nst=6; lset app=(4) rates=invgamma nst=6; lset app=(5) rates=invgamma nst=6; lset app=(6) rates=gamma nst=6; unlink revmat=(all) pinvar=(all) shape=(all) statefreq=(all); prset ratepr=variable; mcmc ngen=15000000 relburnin=yes burninfrac=0.25 printfreq=1000 samplefreq=1000 nruns=2 nchains=4 savebrlens=yes; sumt burnin=3750; sump burnin=3750; end;
Output data
1 Output object(s)
TREE1
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Citation
Taxa
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Trees
Analyses
This study is part of submission
(Status: ).
