TreeBASE Search-Analyses for study 25661

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Analyses for Study 25661

Citation title: "A new lichenized fungus, Orientophila corticola, from South Korea, with a key to the genus".

Study name: "A new lichenized fungus, Orientophila corticola, from South Korea, with a key to the genus".

This study is part of submission 25661 (Status: Published).

Analyses

Analysis 1

Analysis details

Name

Input data

1 Input object(s)

Analysis step

ML analysis (ITS) --

Output data

1 Output object(s)

Analysis 2

Analysis details

Name

Input data

1 Input object(s)

Analysis step

Bayesian inference (ITS) --

Step details

Name

Software used

Name
Version
Algorithm
Commands
the HKY (Hasegawa, Kishino and Yano) method for the substitution model, empirical base frequencies, gamma for the site heterogeneity model, four categories for gamma, and a 10,000,000 Markov chain Monte Carlo chain length with a 10,000-echo state screening and 1000 log parameters. Then, the best tree was constructed in TreeAnnotator 1.8.0 (Drummond & Rambaut 2008) with a burn-in of 5000, no posterior probability limit, a maximum clade credibility tree for the target tree type, and median node heights

Output data

1 Output object(s)

Analysis 3

Analysis details

Name

Input data

1 Input object(s)

Analysis step

ML analysis (ITS + mtSSU) --

Output data

1 Output object(s)

Analysis 4

Analysis details

Name

Input data

1 Input object(s)

Analysis step

Bayesian inference (ITS + mtSSU) --

Step details

Name

Software used

Name
Version
Algorithm
Commands
the HKY (Hasegawa, Kishino and Yano) method for the substitution model, empirical base frequencies, gamma for the site heterogeneity model, four categories for gamma, and a 10,000,000 Markov chain Monte Carlo chain length with a 10,000-echo state screening and 1000 log parameters. Then, the best tree was constructed in TreeAnnotator 1.8.0 (Drummond & Rambaut 2008) with a burn-in of 5000, no posterior probability limit, a maximum clade credibility tree for the target tree type, and median node heights

Output data