Matrix 57869 of Study 27596
Matrices
Title: Fig. S4C Lasiodiplodia TEF1 alignment
Rows
Taxon Label | Row Segments | Characters 1?–30 |
---|---|---|
Lasiodiplodia acaciae CBS 136434 | (none) | TTTTAACCCCGCTCGGCTT--------CAG |
Lasiodiplodia aquilariae CGMCC 3.18471 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia avicenniae CBS 139670 | (none) | TCCCGGCCCCGC------T--------TGG |
Lasiodiplodia avicenniae LAS 199 | (none) | TCCCGGCCCCGC------T--------TGG |
Lasiodiplodia brasiliensis CBS 115447 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia brasiliensis CBS 120395 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia brasiliensis CBS 129754 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia brasiliensis CBS 129756 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia brasiliensis CBS 129758 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia brasiliensis CMM 4015 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia brasiliensis CMW 35884 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia bruguierae CBS 139638 | (none) | TTTAACCCACTC------T----------C |
Lasiodiplodia bruguierae CBS 139669 | (none) | TTTAACCCACTC------T----------C |
Lasiodiplodia bruguierae CBS 141453 | (none) | TTTAACCCACTC------T----------C |
Lasiodiplodia cinnamomi CFCC 51997 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia cinnamomi CFCC 51998 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia citricola CBS 124706 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia citricola was mitidjana ALG111 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia citricola was mitidjana ALG39 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia citricola CBS 124707 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia citricola was vaccinii CGMCC 3.19022 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia crassispora CBS 118741 | (none) | TCCCAATCCCGC------T----------T |
Lasiodiplodia crassispora CBS 125626 | (none) | TCCCAATCCCGC------T----------T |
Lasiodiplodia crassispora CBS 125627 | (none) | TCCCAATCCCGCA-----T----------T |
Lasiodiplodia crassispora CMM 4583 | (none) | TCCCAATCCCGC------T----------T |
Lasiodiplodia crassispora CMM 4585 | (none) | TCCCAATCCCGC------T----------T |
Lasiodiplodia crassispora CMW 13488 | (none) | TCCCAATCCCGC------T----------T |
Lasiodiplodia crassispora CMW 33266 | (none) | TCCCAATCCCGC------T----------T |
Lasiodiplodia crassispora was pyriformis CBS 121770 | (none) | TCCCAATCCCGC------T----------T |
Lasiodiplodia crassispora was pyriformis CBS 121771 | (none) | TCCCAATCCCGC------T----------T |
Lasiodiplodia laeliocattleyae was egyptiacae BOT 29 | (none) | ?CCCAACCCCGC------T--------TGG |
Lasiodiplodia laeliocattleyae was egyptiacae CBS 130992 | (none) | ?CCCAACCCCGC------T--------TGG |
Lasiodiplodia laeliocattleyae CBS 167.28 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia euphorbiaceicola CBS 136925 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia euphorbiaceicola CBS 136926 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia euphorbiaceicola CMM 3609 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia euphorbiaceicola CMW 33268 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia euphorbiaceicola CMW 33350 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia euphorbiaceicola CMW 36231 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia gilanensis CBS 124704 | (none) | TTTTAACCCCGCTCGGCTT--------CAG |
Lasiodiplodia gilanensis CBS 124705 | (none) | TTTTAACCCCGCTCGGCTT--------CAG |
Lasiodiplodia gilanensis was missouriana CBS 128311 | (none) | TTTTAACCCCGCTCGGCTT--------CAG |
Lasiodiplodia gilanensis was missouriana CBS 128312 | (none) | TTTTAACCCCGCTCGGCTT--------CAG |
Lasiodiplodia gonubiensis CBS 115812 | (none) | ???????????????????????????TGC |
Lasiodiplodia gonubiensis CBS 116355 | (none) | ???????????????????????????TGC |
Lasiodiplodia gonubiensis CBS 138654 | (none) | ???????????????????????????TGC |
Lasiodiplodia gravistriata CMM 4564 | (none) | TCCCGACCCCTC-----------------C |
Lasiodiplodia gravistriata CMM 4565 | (none) | TCCCGACCCCTC-----------------C |
Lasiodiplodia hormozganensis CBS 124708 | (none) | CTCCAACCCCGC-----TT--------TGG |
Lasiodiplodia hormozganensis CBS 124709 | (none) | CTCCAACCCCGC-----TT--------TGG |
Lasiodiplodia hormozganensis CBS 133510 | (none) | CTCCAACCCCGC-----TT--------TGG |
Lasiodiplodia hormozganensis CBS 168.28 | (none) | CTCCAACCCCGC-----TT--------TGG |
Lasiodiplodia iranensis CMW 33252 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia iranensis CMW 33311 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia iranensis CMW 33333 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia iranensis CMW 35881 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia iraniensis CBS 124710 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia iraniensis was jatrophicola CBS 111005 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia iraniensis was jatrophicola CBS 111008 | (none) | ?????????????????????????????? |
Lasiodiplodia iraniensis was jatrophicola CBS 124711 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia iraniensis was jatrophicola CMM 3610 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia lignicola CBS 134112 | (none) | TCCCAGCCCCGC------T--------TGG |
Lasiodiplodia lignicola was chinensis CGMCC 3.18044 | (none) | TCCCAGCCCCGC------T--------TGG |
Lasiodiplodia lignicola was chinensis CGMCC 3.18061 | (none) | TCCCAGCCCCGC------T--------TGG |
Lasiodiplodia lignicola was sterculiae CBS 127106 | (none) | TCCCAGCCCCGC------T--------TGG |
Lasiodiplodia lignicola was sterculiae CBS 342.78 | (none) | ?CCCAGCCCCGC------T--------TGG |
Lasiodiplodia lignicola was tenuiconidia CGMCC 3.18449 | (none) | TCCCAGCCCCGC------T--------TGG |
Lasiodiplodia macrospora CMM 3833 | (none) | CCCAACCCCCTC-----------------C |
Lasiodiplodia mahajangana CBS 112874 | (none) | TTTTTACCCCTCTCGACTT----------- |
Lasiodiplodia mahajangana CBS 124925 | (none) | TTTTTACCCCTCTCGACTT----------- |
Lasiodiplodia mahajangana CBS 124926 | (none) | TTTTTACCCCTCTCGACTT----------- |
Lasiodiplodia mahajangana CBS 125266 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana CMW 33261 | (none) | TTTTTACCCCTCTCG--------------- |
Lasiodiplodia mahajangana was caatinguensis CBS 190.73 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was caatinguensis CMM 1325 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was caatinguensis IBL 381 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was curvata CGMCC 3.18456 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was curvata CGMCC 3.18476 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was exigua BL184 | (none) | TTTTTACCCCTCTCGACTT----------- |
Lasiodiplodia mahajangana was exigua CBS 137785 | (none) | TTTTTACCCCTCTCGACTT----------- |
Lasiodiplodia mahajangana was irregularis CBS 125262 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was irregularis CBS 125267 | (none) | ??????????TCTCGACTT--------TGG |
Lasiodiplodia mahajangana was irregularis CBS 138554 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was irregularis CGMCC 3.18468 | (none) | TTTTTACCCCTCTCGACTT----------- |
Lasiodiplodia mahajangana LAS16 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was irregularis CMW 26710 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was macroconidia CGMCC 3.18479 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was macroconidia CMW 33323 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was macroconidia CMW 36172 | (none) | TTTTTACCCCTCTCGACTT--------TGG |
Lasiodiplodia mahajangana was pandanicola MFLUCC 16 0265 | (none) | ?????ACCCCTCTCGACTT----------- |
Lasiodiplodia margaritacea CBS 122065 | (none) | TCACAACCCCGC------T----------C |
Lasiodiplodia margaritacea CBS 122519 | (none) | TCACAACCCCGC------T----------C |
Lasiodiplodia margaritacea CBS 138289 | (none) | TCACAACCCCGC------T----------C |
Lasiodiplodia margaritacea CBS 138290 | (none) | TCACAACCCCGC------T----------C |
Lasiodiplodia margaritacea CBS 138291 | (none) | TCACAACCCCGC------T----------C |
Lasiodiplodia mediterranea CBS 137783 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia mediterranea CBS 137784 | (none) | CCCCAACCCCGC------T--------TGG |
Lasiodiplodia microconidia CGMCC 3.18485 | (none) | TCCCAGCCCCGC------T--------TGG |
Lasiodiplodia parva CBS 456.78 | (none) | CCCCAACCCCGC------C--------TGG |
Lasiodiplodia parva CBS 494.78 | (none) | CCCCAACCCCGC------C--------TGG |
Lasiodiplodia plurivora CBS 121103 | (none) | TTTTAACCCCGCTCGGCTT--------CAG |
Lasiodiplodia plurivora STE U 5803 | (none) | TTTTAACCCCGCTCGGCTT--------CAG |
Lasiodiplodia pontae CBS 117454 | (none) | TTTTAACCCCGCTCGGCCT--------CAA |
Lasiodiplodia pontae CMM 1277 | (none) | TTTTAACCCCGCTCGGCCT--------CAA |
Lasiodiplodia pseudotheobromae CBS 116459 | (none) | TCCCAACCCCGC------T--------TGG |
Lasiodiplodia pseudotheobromae CBS 116460 | (none) | TCCCAACCCCGC------T--------TGG |
Lasiodiplodia pseudotheobromae CBS 121772 | (none) | TCCCAACCCCGC------T--------TGG |
Lasiodiplodia pseudotheobromae CBS 121773 | (none) | TCCCAACCCCGC------T--------TGG |
Lasiodiplodia pseudotheobromae CBS 130991 | (none) | TCCCAACCCCGC------T--------TGG |
Lasiodiplodia pseudotheobromae CBS 304.79 | (none) | TCCCAACCCCGC------T--------TGG |
Lasiodiplodia pseudotheobromae CGMCC 3.18047 | (none) | TCCCAACCCCGC------T--------TGG |
Lasiodiplodia rubropurpurea CBS 118740 | (none) | TCCCAGCCCCGC------T----------C |
Lasiodiplodia rubropurpurea WAC 12536 | (none) | TCCCAGCCCCGC------T----------C |
Lasiodiplodia subglobosa CMM 3872 | (none) | TCCCGACCCCTC-----------------C |
Lasiodiplodia subglobosa CMM 4046 | (none) | TCCCGACCCCTC-----------------C |
Lasiodiplodia syzygii CBS 120512 | (none) | ???TAACCCCGC------T----------C |
Lasiodiplodia syzygii RB07 | (none) | ?????ACCCCGC------T----------C |
Lasiodiplodia syzygii MFLUCC 19 0219.1 | (none) | ACGTAACCCCGC------T----------C |
Lasiodiplodia syzygii GUCC 9719.2 | (none) | ACGTAACCCCGC------T----------C |
Lasiodiplodia syzygii GUCC 9719.3 | (none) | ACGTAACCCCGC------T----------C |
Lasiodiplodia thailandica CBS 138653 | (none) | TTTTCATCCCTCTCGCCTTCAGCGCTGCAG |
Lasiodiplodia thailandica CBS 138760 | (none) | TTTTCATCCCTCTCGCCTTCAGCGCTGCAG |
Lasiodiplodia thailandica was hyalina CGMCC 3.17975 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia thailandica was hyalina CGMCC 3.18383 | (none) | TTTTCATCCCTCTCGCCTT--------CAG |
Lasiodiplodia thailandica was swieteniae MFLUCC 18 0244 | (none) | TTTTCATCCCTCTCGCCTTCAGCGCTGCAG |
Lasiodiplodia theobromae CBS 111530 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae CBS 130989 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae CBS 138868 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae CBS 139728 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae CBS 164.96 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae CBS 214.50 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae CBS 306.58 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae CPC 27690 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae CPC 28505 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae was laosensis CGMCC 3.18464 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia theobromae was laosensis CGMCC 3.18473 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia tropica CGMCC 3.18477 | (none) | TCCCAGCCCCGC------T--------TGG |
Lasiodiplodia venezuelensis CBS 118739 | (none) | TTCCAACCCCGC-----------------T |
Lasiodiplodia venezuelensis CBS 129755 | (none) | TTCCAACCCCGC-----------------T |
Lasiodiplodia venezuelensis CBS 129757 | (none) | TTCCAACCCCGC-----------------T |
Lasiodiplodia venezuelensis CBS 129759 | (none) | TTCCAACCCCGC-----------------T |
Lasiodiplodia venezuelensis CMW 13512 | (none) | TTCCAACCCCGC-----------------T |
Lasiodiplodia viticola CBS 128313 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia viticola CBS 128314 | (none) | TTTTAACCCCTCTCGACTT--------CGG |
Lasiodiplodia vitis CBS 124060 | (none) | CCCCAACCCCGC------T--------TGG |
Neodeightonia phoenicum CBS 122528 | (none) | CTTTCGCACCTC----------------GG |
Columns
None of the columns has a description.