@ARTICLE{TreeBASE2Ref15428,
author = {Katerina Fliegerov? and B. Hodrov? and Kerstin Voigt},
title = {Classical and Molecular Approaches as a Powerful Tool for the Characterization of Rumen Polycentric Fungi.},
year = {2004},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Folia Microbiologica (Praha)},
volume = {49},
number = {2},
pages = {157--164},
abstract = {The ribosomal ITS 1 and ITS 2 fragments from 8 isolates of polycentric rumen anaerobic fungi were PCR-amplified and sequenced; the sequences obtained were aligned with published data and phylogenetic analyses were performed. The analysis of ITS 1 fragment clearly differentiated between the two polycentric genera Orpinomyces and Anaeromyces and these classification is supported by morphological observation. A multi-order phylogram based on ITS2 sequences proved that anaerobic rumen fungi are separated from aerobic chytrids, which form a well-supported monophylum with highest possible bootstrap proportion values of 100 % . Sequence analysis of ITS regions is a powerful tool for the classification of anaerobic fungi, however morphological description of strains is still necessary because some genera of rumen fungi display a high genetic heterogeneity.}
}
Matrix 712 of Study 1074

Citation title:
"Classical and Molecular Approaches as a Powerful Tool for the Characterization of Rumen Polycentric Fungi.".

This study was previously identified under the legacy study ID S976
(Status: Published).
Matrices
Title: ITS1
Description: Legacy TreeBASE Matrix ID = M1623
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Piromyces PrI |
(none)
|
AAGGATCATTAATAAATGGCTCGAT----- |
| Piromyces polycephalus |
(none)
|
AAGGATCATTAAAAAATTCTGACTCTTAAA |
| Orpinomyces sp 2 |
(none)
|
AAGGATCATTAAAAAATAAT--CACAGTTT |
| Orpinomyces sp 1 |
(none)
|
AAGGATCATTAAAAAATAAT--CACAGTTT |
| Orpinomyces sp |
(none)
|
AAGGATCATTAAAAAATAAT--CACAGTTT |
| Orpinomyces KF3 |
(none)
|
AAGGATCATTAAAAAATAAT--CACTGTAT |
| Orpinomyces KF2 |
(none)
|
AAGGATCATTAAAAAATAAT--CACAGTTT |
| Orpinomyces KF1 |
(none)
|
AAGGATCATTAAAAAATAAT--CACAGTTT |
| Neocallimastix patriciarum |
(none)
|
AAGGATCATTAAAAAATATCA-CTCGATTG |
| Neocallimastix hurleyensis |
(none)
|
AAGGATCATTAAAAAATATCA-CTTGATTG |
| Neocallimastix frontalis SR4 |
(none)
|
AAGGATCATTAAAAAATATCG-CTCGATTG |
| Neocallimastix frontalis |
(none)
|
AAGGATCATTAAAAAATATCG-CTCGATTG |
| Caecomyces communis |
(none)
|
AAGGATCATTAAAAAATATCG-CTCGATTG |
| Anaeromyces sp AUC2 |
(none)
|
AAGGATCATTAATAAATTTTCCAACAAATG |
| Anaeromyces sp AUC1 |
(none)
|
AAGGATCATTAATAAATTTTCCAACAAATG |
| Anaeromyces sp |
(none)
|
AAGGATCATTAAAAAATTCTGCCATTGTTT |
| Anaeromyces K9 |
(none)
|
AAGGATCATTAATAAATTTTCCAACGATCC |
| Anaeromyces K5 |
(none)
|
AAGGATCATTAATAAATTTTCCAACGAATT |
| Anaeromyces JF1 |
(none)
|
AAGGATCATTAATAAATTT-CCAACAAATG |
| Anaeromyces BF1 |
(none)
|
AAGGATCATTAATAAATTT-CCAACAAATG |
Columns
None of the columns has a description.