@ARTICLE{TreeBASE2Ref26204,
author = {Justin P Shaffer and Carolina Sarmiento and Paul-Camilo Zalamea and Rachel Elizabeth Gallery and Adam S Davis and David A Baltrus and A. Elizabeth Arnold},
title = {Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves},
year = {2016},
keywords = {Ascomycota, Barro Colorado Island, Cecropia, endobacteria, phylogenetic diversity, pioneers, symbiosis},
doi = {10.3389/fevo.2016.00116},
url = {http://},
pmid = {},
journal = {Frontiers in Ecology and Evolution},
volume = {4},
number = {116},
pages = {},
abstract = {Interactions between fungi and tropical trees are responsible for some of the most biodiverse communities on earth. These interactions occur in the presence of additional microbes that can modify fungal phenotypes, such as endohyphal bacteria. Here we examine the occurrence, diversity, and composition of endohyphal bacteria (EHB) in fungi that colonize seeds and leaves of plants in tropical forests. We use PCR and visual fluorescence to detect EHB among fungi, and a phylogenetic approach to explore the evolutionary relationships among seed- and leaf-inhabiting fungi and their bacterial partners. Analyses focusing on two prevalent orders of fungi (Hypocreales and Xylariales) revealed that seed- and leaf-inhabiting fungi have a shared evolutionary history, yet differ in the prevalence, richness, and composition of their endohyphal symbionts. Phylogenetic analyses detected that the EHB habit is widespread, here encompassing members of seven phyla of bacteria (including three classes of Proteobacteria). Occurring in seed- vs. leaf-associated fungi has not resulted in detectable structure in the evolution of EHB, and no congruence was observed in the phylogenetic relationships of these apparently facultative, horizontally transmitted symbionts. Our results are consistent with multiple origins of fungus-bacterium associations and argue for evaluating focal pairs to determine how particular EHB affect the establishment or maintenance of fungal symbioses in seeds and leaves.}
}
Matrix 24674 of Study 19714
Citation title:
"Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".
Study name:
"Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".
This study is part of submission 19714
(Status: Published).
Matrices
Title: Boechera fendleri group with pistillata clones from Boechera porphyrea
Rows
|
Taxon Label |
Row Segments |
Characters 1?–30 |
| Boechera stricta 400a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera perennans 016 |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera perennans 133 |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera williamsii 367a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera wyomingensis 015 |
(none)
|
GWWAWAWAWGCCWCWC??GCWCCCCGAW?A |
| Boechera pendulina 168 |
(none)
|
GWGAWAWAWGCCWCWC??GCWCCCCAAW?A |
| Boechera gracilipes 174 |
(none)
|
GWWAW?WAWGCWWCWC??GCWCCCCGAW?A |
| Boechera nevadensis 013a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera stricta 025a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera spatifolia 124a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera spatifolia 322a |
(none)
|
????WAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera texana 150d |
(none)
|
GWWAWAWAWGCCWCWC??GCWCCCCAAW?A |
| Boechera fendleri 226b |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera fendleri 229a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera gracilipes 347a |
(none)
|
GWWAWAWAWGC?WCWC??GCWCCCCGAW?A |
| Boechera porphyrea 230d P7 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P11 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a PC1 230d PC2 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P16 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P1 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P5 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P9 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P8 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P7 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P17 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P4 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P2 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 154a P15 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 230d PC3 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 230d PC1 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 230d P6 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 230d P5 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 230d PC4 |
(none)
|
?????????????????????????????? |
| Boechera porphyrea 230d P13 |
(none)
|
?????????????????????????????? |
Columns
| Column |
Character Description |
|
1090
|
indel1 6 6
|
|
1096
|
indel7 27 27
|
|
1102
|
indel13 39 39
|
|
1108
|
indel19 58 58
|
|
1114
|
indel25 89 92
|
|
1120
|
indel31 189 190
|
|
1126
|
indel37 340 341
|
|
1132
|
indel43 375 382
|
|
1138
|
indel49 392 396
|
|
1144
|
indel55 719 719
|
|
1150
|
indel61 999 999
|
|
1156
|
indel67 1080 1080
|
|
1917
|
indel1 6 6
|
|
1923
|
indel7 352 354
|
|
1929
|
indel13 536 541
|
|
2607
|
indel1 4 4
|
|
2613
|
indel7 22 22
|
|
2619
|
indel13 89 89
|
|
2625
|
indel19 179 179
|
|
2631
|
indel25 458 458
|
|
2637
|
indel31 478 478
|
|
2643
|
indel37 592 592
|
|
3261
|
indel1 60 60
|
|
3267
|
indel7 101 101
|
|
3273
|
indel13 256 256
|
|
3279
|
indel19 293 293
|
|
3285
|
indel25 460 463
|
|
4824
|
indel1 30 30
|
|
4830
|
indel7 278 283
|
|
4836
|
indel13 382 386
|
|
4842
|
indel19 445 445
|
|
4848
|
indel25 472 472
|
|
4854
|
indel31 504 505
|
|
4860
|
indel37 746 748
|
|
4866
|
indel43 777 777
|
|
5811
|
indel1 9 9
|
|
5817
|
indel7 46 46
|
|
5823
|
indel13 127 128
|
|
5829
|
indel19 189 192
|
|
5835
|
indel25 228 228
|
|
5841
|
indel31 264 264
|
|
5847
|
indel37 312 314
|
|
5853
|
indel43 355 355
|
|
5859
|
indel49 418 442
|
|
5865
|
indel55 468 468
|
|
5871
|
indel61 471 472
|
|
5877
|
indel67 471 486
|
|
5883
|
indel73 472 483
|
|
5889
|
indel79 533 536
|
|
5895
|
indel85 616 616
|
|
5901
|
indel91 630 637
|
|
5907
|
indel97 646 659
|
|
5913
|
indel103 667 749
|
|
5919
|
indel109 687 690
|
|
5925
|
indel115 792 792
|
|
5931
|
indel121 826 850
|
|
5937
|
indel127 856 857
|
|
5943
|
indel133 867 872
|
|
5949
|
indel139 868 873
|
|
5955
|
indel145 901 901
|
|
5961
|
indel151 928 935
|
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