TreeBASE Search-Trees for study 19714

@ARTICLE{TreeBASE2Ref26204, author = {Justin P Shaffer and Carolina Sarmiento and Paul-Camilo Zalamea and Rachel Elizabeth Gallery and Adam S Davis and David A Baltrus and A. Elizabeth Arnold}, title = {Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves}, year = {2016}, keywords = {Ascomycota, Barro Colorado Island, Cecropia, endobacteria, phylogenetic diversity, pioneers, symbiosis}, doi = {10.3389/fevo.2016.00116}, url = {http://}, pmid = {}, journal = {Frontiers in Ecology and Evolution}, volume = {4}, number = {116}, pages = {}, abstract = {Interactions between fungi and tropical trees are responsible for some of the most biodiverse communities on earth. These interactions occur in the presence of additional microbes that can modify fungal phenotypes, such as endohyphal bacteria. Here we examine the occurrence, diversity, and composition of endohyphal bacteria (EHB) in fungi that colonize seeds and leaves of plants in tropical forests. We use PCR and visual fluorescence to detect EHB among fungi, and a phylogenetic approach to explore the evolutionary relationships among seed- and leaf-inhabiting fungi and their bacterial partners. Analyses focusing on two prevalent orders of fungi (Hypocreales and Xylariales) revealed that seed- and leaf-inhabiting fungi have a shared evolutionary history, yet differ in the prevalence, richness, and composition of their endohyphal symbionts. Phylogenetic analyses detected that the EHB habit is widespread, here encompassing members of seven phyla of bacteria (including three classes of Proteobacteria). Occurring in seed- vs. leaf-associated fungi has not resulted in detectable structure in the evolution of EHB, and no congruence was observed in the phylogenetic relationships of these apparently facultative, horizontally transmitted symbionts. Our results are consistent with multiple origins of fungus-bacterium associations and argue for evaluating focal pairs to determine how particular EHB affect the establishment or maintenance of fungal symbioses in seeds and leaves.} }

Delicious

Connotea

Trees for Study 19714

Citation title: "Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".

Study name: "Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".

This study is part of submission 19714 (Status: Published).

Trees

ID	Tree Label	Tree Title	Tree Type	Tree Kind	Taxa
Tr98732	Bacillales excluding Paenibacillaceae / Firmicutes 16S ML Tree	Tr98732	Single	Gene Tree	View Taxa
Tr98719	Microchaetaceae + Rivulariaceae / Cyanobacteria 16S ML Tree	Tr98719	Single	Gene Tree	View Taxa
Tr98723	Acidobacteriaceae / Acidobacteria 16S ML Tree	Tr98723	Single	Gene Tree	View Taxa
Tr98670	Entonaema - ITS ML Tree	Tr98670	Single	Gene Tree	View Taxa
Tr98662	Gliocladiopsis - TEF ML Tree	Tr98662	Single	Gene Tree	View Taxa
Tr98673	Fusarium solani - MLSA ML Tree	Tr98673	Single	Gene Tree	View Taxa
Tr98710	Fusarium lateritium - ITS ML Tree	Tr98710	Single	Gene Tree	View Taxa
Tr98727	Rhizobiales / Alphaproteobacteria 16S ML Tree	Tr98727	Single	Gene Tree	View Taxa
Tr98680	Fusarium concolor - ITS ML Tree	Tr98680	Single	Gene Tree	View Taxa
Tr98682	Allantonectria - ITS ML Tree	Tr98682	Single	Gene Tree	View Taxa
Tr98714	Enterobacteriaceae / Gammaproteobacteria 16S ML Tree	Tr98714	Single	Gene Tree	View Taxa
Tr98755	Fusarium solani ITS MLT	Tr98755			View Taxa
Tr98713	Hypoxylon ITS ML Tree	Tr98713	Single	Gene Tree	View Taxa
Tr98730	Sphingomonadaceae / Alphaproteobacteria 16S ML Tree	Tr98730	Single	Gene Tree	View Taxa
Tr98721	tree 1	Tr98721			View Taxa
Tr98668	Xylaria "HY" - ITS ML Tree	Tr98668	Single	Gene Tree	View Taxa
Tr98684	Bionectria - ITS ML Tree	Tr98684	Single	Gene Tree	View Taxa
Tr98716	Nocardiaceae / Actinobacteria 16S ML Tree	Tr98716	Single	Gene Tree	View Taxa
Tr98671	Nemania - ITS ML Tree	Tr98671	Single	Gene Tree	View Taxa
Tr98726	Lactobacillales / Firmicutes 16S ML Tree	Tr98726	Single	Gene Tree	View Taxa
Tr98683	Calonectria - ITS ML Tree	Tr98683	Single	Gene Tree	View Taxa
Tr98715	Negativicutes + Clostridia / Firmicutes 16S ML Tree	Tr98715	Single	Gene Tree	View Taxa
Tr98663	Fusarium solani - RPB2.5-7 ML Tree	Tr98663	Single	Gene Tree	View Taxa
Tr98669	Xylaria "PO" - ITS ML Tree	Tr98669	Single	Gene Tree	View Taxa
Tr98728	Paenibacillaceae / Firmicutes 16S ML Tree	Tr98728	Single	Gene Tree	View Taxa
Tr98679	Fusarium liseola - ITS ML Tree	Tr98679	Single	Gene Tree	View Taxa
Tr98729	Burkholderiaceae / Betaproteobacteria 16S ML Tree	Tr98729	Single	Gene Tree	View Taxa
Tr98693	Chromatiales - 16S ML Tree	Tr98693	Single	Gene Tree	View Taxa
Tr98718	Oxalobacteriaceae / Betaproteobacteria 16S ML Tree	Tr98718	Single	Gene Tree	View Taxa
Tr98722	Comamonadaceae / Betaproteobacteria 16S ML Tree	Tr98722	Single	Gene Tree	View Taxa
Tr98720	Micromonosporales / Actinobacteria 16S ML Tree	Tr98720	Single	Gene Tree	View Taxa
Tr98667	Gliocladiopsis - RPB1 ML Tree	Tr98667	Single	Gene Tree	View Taxa
Tr98731	Xanthomonadaceae / Gammaproteobacteria 16S ML Tree	Tr98731	Single	Gene Tree	View Taxa
Tr98724	Pasteurellaceae / Gammaproteobacteria	Tr98724	Single	Gene Tree	View Taxa
Tr98725	Pseudomonadales / Gammaproteobacteria 16S ML Tree	Tr98725	Single	Gene Tree	View Taxa
Tr98704	Rhodospirillaceae - 16S ML Tree	Tr98704	Single	Gene Tree	View Taxa
Tr98733	Chitinophagales + Cytophagales / Bacteroidetes 16S ML Tree	Tr98733	Single	Gene Tree	View Taxa
Tr98665	Fusarium solani - RPB2.7-11 ML Tree	Tr98665	Single	Gene Tree	View Taxa
Tr98661	Fusarium solani - TEF ML Tree	Tr98661	Single	Gene Tree	View Taxa
Tr98756	Gliocladiopsis - ITS MLT	Tr98756			View Taxa
Tr98674	Gliocladiopsis - MLSA ML Tree	Tr98674	Single	Gene Tree	View Taxa
Tr98757	Micrococcales Streptomycetales Actinobacteria 16S MLT	Tr98757			View Taxa