TreeBASE Search-Taxa in tree 98663 of the phylogeny or phylogenetic data in study 19714

@ARTICLE{TreeBASE2Ref26204, author = {Justin P Shaffer and Carolina Sarmiento and Paul-Camilo Zalamea and Rachel Elizabeth Gallery and Adam S Davis and David A Baltrus and A. Elizabeth Arnold}, title = {Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves}, year = {2016}, keywords = {Ascomycota, Barro Colorado Island, Cecropia, endobacteria, phylogenetic diversity, pioneers, symbiosis}, doi = {10.3389/fevo.2016.00116}, url = {http://}, pmid = {}, journal = {Frontiers in Ecology and Evolution}, volume = {4}, number = {116}, pages = {}, abstract = {Interactions between fungi and tropical trees are responsible for some of the most biodiverse communities on earth. These interactions occur in the presence of additional microbes that can modify fungal phenotypes, such as endohyphal bacteria. Here we examine the occurrence, diversity, and composition of endohyphal bacteria (EHB) in fungi that colonize seeds and leaves of plants in tropical forests. We use PCR and visual fluorescence to detect EHB among fungi, and a phylogenetic approach to explore the evolutionary relationships among seed- and leaf-inhabiting fungi and their bacterial partners. Analyses focusing on two prevalent orders of fungi (Hypocreales and Xylariales) revealed that seed- and leaf-inhabiting fungi have a shared evolutionary history, yet differ in the prevalence, richness, and composition of their endohyphal symbionts. Phylogenetic analyses detected that the EHB habit is widespread, here encompassing members of seven phyla of bacteria (including three classes of Proteobacteria). Occurring in seed- vs. leaf-associated fungi has not resulted in detectable structure in the evolution of EHB, and no congruence was observed in the phylogenetic relationships of these apparently facultative, horizontally transmitted symbionts. Our results are consistent with multiple origins of fungus-bacterium associations and argue for evaluating focal pairs to determine how particular EHB affect the establishment or maintenance of fungal symbioses in seeds and leaves.} }

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Taxa for tree 98663 of Study 19714

Citation title: "Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".

Study name: "Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".

This study is part of submission 19714 (Status: Published).

Taxa

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ID	Taxon Label	NCBI taxid	uBIO namebankID
2445060	10587_Fusarium__C._insignis_LS_.8-1.__KJ125742.1\|
2445008	9876_Fusarium__C._insignis_BCI_.9-18.__DQ778913.1\|
2445107	B043_Fusarium__C._insignis_BCI_.5-8.__GU170651.1\|
2445011	B469_Fusarium__C._insignis_BCI_.8-8.__KP132216.1\|
2445018	Fusarium_cf._solani_CBS.2012_strain_CBS.118931__France__JX435204.1\|
2445043	Fusarium_iludens_NRRL.22090__Beilschmiedia_tawa_New_Zealand__Clade_1\|
2445063	Fusarium_keratoplasticum_FRC.S-2369__FSSC_2-ii__Sink_drain_Florida\|
2445049	Fusarium_keratoplasticum_FRC.S-2477__FSSC_2ss__Sink_drain_Virginia_*_exTYPE\|
2445110	Fusarium_keratoplasticum_FRC.S.2477__indoor_plumbing_Virginia__R_130690.1\|
2445031	Fusarium_keratoplasticum_NRRL.22641__FSSC_2-c__Human_eye_Nigeria\|
2445088	Fusarium_keratoplasticum_NRRL.22661__FSSC_2-d__Human_eye_Japan\|
2445021	Fusarium_keratoplasticum_NRRL.25391__FSSC_2-p__Shrimp_California\|
2445009	Fusarium_keratoplasticum_NRRL.31165__FSSC_2-k__Human_Texas\|
2445047	Fusarium_keratoplasticum_NRRL.32780__FSSC_2-u__Sea_turtle_Texas\|
2445044	Fusarium_keratoplasticum_NRRL.32862__FSSC_2-r__Human_Texas\|
2445040	Fusarium_keratoplasticum_NRRL.43373__FSSC_2-b__Contact_lens_Malaysia\|
2445007	Fusarium_keratoplasticum_NRRL.43433__FSSC_2-a__Human_eye_Ohio\|
2445089	Fusarium_keratoplasticum_NRRL.43649__FSSC_2-j__Human_eye_Nevada\|
2445068	Fusarium_keratoplasticum_NRRL.46697__FSSC_2-x__Human_eye_Qatar\|
2445017	Fusarium_keratoplasticum_NRRL.52704__FSSC_2-gg__Tetranychus_urticae_Virginia\|
2445111	Fusarium_keratoplasticum_strain_FRC.S.2369_*_J235143.1\|
2445037	Fusarium_petroliphilum_FRC.S.2462__sink_drain_Florida__J235323.1\|
2445098	Fusarium_petroliphilum_NRRL.22268__FSSC_1-b__TYPE\|
2445023	Fusarium_petroliphilum_NRRL.28546__FSSC_1-a__Human_eye_Massachusetts\|
2445012	Fusarium_petroliphilum_NRRL.32304__FSSC_1-d__Human_Colorado\|
2445025	Fusarium_petroliphilum_NRRL.32856__FSSC_1-e__Ceiling_plaster_Ohio\|
2445106	Fusarium_petroliphilum_NRRL.43812__FSSC_1-c__Contact_lens_solution_New_York\|
2445080	Fusarium_petroliphilum_NRRL.46440__FSSC_1-g__Finger_Milan\|
2445084	Fusarium_petroliphilum_NRRL.54988_*_KC808252.1\|
2445005	Fusarium_solani_CBS_102824__France__JX435197.1\|
2445016	Fusarium_solani_FRC.2432_*_FSSC_39-a\|
2445015	Fusarium_solani_NRRL.20438__FSSC_19-a__Camellia_sinensis_India\|
2445020	Fusarium_solani_NRRL.22101__FSSC_21-a__Cotton_cloth_Panama\|
2445091	Fusarium_solani_NRRL.22153__FSSC_10-a_MPI__Cucerbit_USA\|
2445054	Fusarium_solani_NRRL.22157__FSSC_17-a__Morus_alba_Japan\|
2445024	Fusarium_solani_NRRL.22163__FSSC_22-a__MPIV_*_Xanthoxylum_piperitum_Japan\|
2445099	Fusarium_solani_NRRL.22178__FSSC_32-a__Eudicot_tree_Venezuela\|
2445033	Fusarium_solani_NRRL.22354__FSSC_33-a__Bark_French_Guiana\|
2445029	Fusarium_solani_NRRL.22389__FSSC_24-a__Liriodendron_tulipifera_Maryland\|
2445046	Fusarium_solani_NRRL.22400__FSSC_23-a__MPII_*_Ipomoea_batatas_North_Carolina\|
2445061	Fusarium_solani_NRRL.22570__FSSC_31-a__Piper_nigrum_Brazil\|
2445087	Fusarium_solani_NRRL.22579__FSSC_30-a__Bark_Indonesia\|
2445071	Fusarium_solani_NRRL.22586__FSSC_13-b__Robinea_pseudoacacia_Japan\|
2445072	Fusarium_solani_NRRL.22611__FSSC_14-a__Human_eye_Michigan\|
2445004	Fusarium_solani_NRRL.22642__FSSC_12-a__Prawn_Japan\|
2445070	Fusarium_solani_NRRL.25137__FSSC_37-a__Diseased_cocoa_pod_Papua_New_Guinea\|
2445074	Fusarium_solani_NRRL.28008__FSSC_29-a__Human_Alabama\|
2445036	Fusarium_solani_NRRL.28009__FSSC_15-a__Human_eye_Texas\|
2445002	Fusarium_solani_NRRL.28030__FSSC_16-a__Human_Thailand\|
2445062	Fusarium_solani_NRRL.28541__FSSC_26-a__Human_Conneticut\|
2445064	Fusarium_solani_NRRL.28679__FSSC_5-h__Human_Cuba\|
2445077	Fusarium_solani_NRRL.31158__FSSC_18-a__Human_Texas\|
2445038	Fusarium_solani_NRRL.31169__FSSC_25-a__Human_Texas\|
2445055	Fusarium_solani_NRRL.32316__FSSC_20-c__Human_eye_Florida\|
2445094	Fusarium_solani_NRRL.32437__FSSC_28-a__Human_Switzerland\|
2445056	Fusarium_solani_NRRL.32721__FSSC_3+4-qq__Human_eye_Florida\|
2445079	Fusarium_solani_NRRL.32751__FSSC_36-a__Human_eye_Florida\|
2445035	Fusarium_solani_NRRL.32755__FSSC_9-a__Turtle_Florida\|
2445030	Fusarium_solani_NRRL.34174__FSSC_8-d__Human_Texas\|
2445092	Fusarium_solani_NRRL.37625__FSSC_27-a__Human_Netherlands\|
2445006	Fusarium_solani_NRRL.43489__FSSC_6-a__Human_eye_Maryland\|
2445048	Fusarium_solani_NRRL.43502__FSSC_7-a__Human_eye_Tennessee\|
2445069	Fusarium_solani_NRRL.45880__FSSC_11-c_MPVI__Pisum_sativum_USA\|
2445097	Fusarium_solani_NRRL.46703__FSSC_34-a__Nematode_Spain\|
2445076	Fusarium_solani_NRRL.52781__FSSC_38-a__Hypothenemus_hampei_Benin\|
2445100	Fusarium_sp._NRRL.22412__Bark_French_Guiana__Clade_2\|
2445059	Fusarium_sp._NRRL.46437__human_Italy__GU170643.1\|
2445052	Fusarium_sp._NRRL.52832__human_Italy__GU170651.1\|
2445093	L078_Fusarium__C._insignis_LS_.16-4.__J637954.1\|
2445066	NRRL22268\|
2445028	Nectria_haematococca_MPVI_MAFF.840047__Morus_alba_shoot_Japan__AB513852.1\|
2445057	PS0022_Fusarium__Apeiba_membranaceae_BCI_Armour_SW_t1__AB513852.1\|
2445026	PS0362A_Fusarium__C._insignis_BCI_Armour_E_t1__GU170643.1\|
2445013	PS0411_Fusarium__C._insignis_BCI_Drayton_E_t3__KF918581.1\|
2445083	PS0434_Fusarium__C._insignis_BCI_Pearson_SE_t3__KF918581.1\|
2445081	PS0447_Fusarium__C._insignis_BCI_Armour_W_t6__KC808241.1\|
2445032	PS0537_Fusarium__Trema_micrantha_bl_BCI_Drayton_SE_t1__AB513852.1\|
2445042	PS0581_Fusarium__Trema_micrantha_bl_BCI_Pearson_SW_t1__AB513852.1\|
2445065	PS0615_Fusarium__Trema_micrantha_bl_BCI_Zetek_SE_t1__AB513852.1\|
2445058	PS0657_Fusarium__Trema_micrantha_bl_BCI_Drayton_SW_t3__AB513852.1\|
2445108	PS0745_Fusarium__Trema_micrantha_bl_BCI_Zetek_W_t3__AB513852.1\|
2445101	PS0949_Fusarium__Annona_spraguei_BCI_Armour_SW_t1__KF918581.1\|
2445034	PS0952_Fusarium__Annona_spraguei_BCI_Armour_SW_t1__JX435197.1\|
2445102	PS0958_Fusarium__Annona_spraguei_BCI_Armour_W_t1__AB513852.1\|
2445067	PS0959_Fusarium__Annona_spraguei_BCI_Armour_W_t1__AB513852.1\|
2445090	PS0961_Fusarium__Annona_spraguei_BCI_Armour_W_t1__AB513852.1\|
2445041	PS0962_Fusarium__Annona_spraguei_BCI_Armour_SE_t1__KC808241.1\|
2445082	PS0965_Fusarium__Annona_spraguei_BCI_Armour_SE_t1__AB513852.1\|
2445095	PS0967_Fusarium__Annona_spraguei_BCI_Armour_SE_t1__AB513852.1\|
2445109	PS0968_Fusarium__Annona_spraguei_BCI_Armour_E_t1__AB513852.1\|
2445022	PS0972_Fusarium__Annona_spraguei_BCI_Armour_E_t1__KF918581.1\|
2445019	PS0973_Fusarium__Annona_spraguei_BCI_Drayton_SW_t1__KF918581.1\|
2445051	PS0988_Fusarium__Annona_spraguei_BCI_Drayton_W_t1__AB513852.1\|
2445039	PS0990_Fusarium__Annona_spraguei_BCI_Drayton_W_t1__KC808241.1\|
2445003	PS0996_Fusarium__Annona_spraguei_BCI_Drayton_SE_t1__JX435197.1\|
2445014	PS1004_Fusarium__Annona_spraguei_BCI_Drayton_E_t1__AB513852.1\|
2445104	PS1005_Fusarium__Annona_spraguei_BCI_Drayton_E_t1__AB513852.1\|
2445096	PS1011_Fusarium__Annona_spraguei_BCI_25-Ha_SW_t1__KF918581.1\|
2445103	PS1022_Fusarium__Annona_spraguei_BCI_25-Ha_SE_t1__AB513852.1\|
2445075	PS1034_Fusarium__Annona_spraguei_BCI_Pearson_W_t1__AB513852.1\|
2445085	PS1058_Fusarium__Annona_spraguei_BCI_Zetek_SW_t1__KF918590.1\|
2445050	PS1062_Fusarium__Annona_spraguei_BCI_Zetek_W_t1__JX435197.1\|
2445073	PS1065_Fusarium__Annona_spraguei_BCI_Zetek_W_t1__AB513852.1\|
2445078	PS1067_Fusarium__Annona_spraguei_BCI_Zetek_W_t1__AB513852.1\|
2445027	PS1084_Fusarium__Annona_spraguei_BCI_Zetek_E_t1__KF918581.1\|
2445053	PS1085_Fusarium__Annona_spraguei_BCI_Zetek_E_t1__JX435197.1\|
2445010	PS1115_Fusarium__Annona_spraguei_BCI_Armour_E_t3__GU170643.1\|
2445045	PS1165_Fusarium__Annona_spraguei_BCI_25-Ha_W_t3__KF918581.1\|
2445105	PS1166_Fusarium__Annona_spraguei_BCI_25-Ha_W_t3__JX435197.1\|
2445086	PS1167_Fusarium__Annona_spraguei_BCI_25-Ha_W_t3__JX435197.1\|