TreeBASE Search-Taxa in tree 98669 of the phylogeny or phylogenetic data in study 19714

@ARTICLE{TreeBASE2Ref26204, author = {Justin P Shaffer and Carolina Sarmiento and Paul-Camilo Zalamea and Rachel Elizabeth Gallery and Adam S Davis and David A Baltrus and A. Elizabeth Arnold}, title = {Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves}, year = {2016}, keywords = {Ascomycota, Barro Colorado Island, Cecropia, endobacteria, phylogenetic diversity, pioneers, symbiosis}, doi = {10.3389/fevo.2016.00116}, url = {http://}, pmid = {}, journal = {Frontiers in Ecology and Evolution}, volume = {4}, number = {116}, pages = {}, abstract = {Interactions between fungi and tropical trees are responsible for some of the most biodiverse communities on earth. These interactions occur in the presence of additional microbes that can modify fungal phenotypes, such as endohyphal bacteria. Here we examine the occurrence, diversity, and composition of endohyphal bacteria (EHB) in fungi that colonize seeds and leaves of plants in tropical forests. We use PCR and visual fluorescence to detect EHB among fungi, and a phylogenetic approach to explore the evolutionary relationships among seed- and leaf-inhabiting fungi and their bacterial partners. Analyses focusing on two prevalent orders of fungi (Hypocreales and Xylariales) revealed that seed- and leaf-inhabiting fungi have a shared evolutionary history, yet differ in the prevalence, richness, and composition of their endohyphal symbionts. Phylogenetic analyses detected that the EHB habit is widespread, here encompassing members of seven phyla of bacteria (including three classes of Proteobacteria). Occurring in seed- vs. leaf-associated fungi has not resulted in detectable structure in the evolution of EHB, and no congruence was observed in the phylogenetic relationships of these apparently facultative, horizontally transmitted symbionts. Our results are consistent with multiple origins of fungus-bacterium associations and argue for evaluating focal pairs to determine how particular EHB affect the establishment or maintenance of fungal symbioses in seeds and leaves.} }

Delicious

Connotea

Taxa for tree 98669 of Study 19714

Citation title: "Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".

Study name: "Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".

This study is part of submission 19714 (Status: Published).

Taxa

Back Return to complete tree view

ID	Taxon Label	NCBI taxid	uBIO namebankID
2445302	10282_Xylaria__C._insignis_BCI_{5-18}__JQ761018.1
2445296	10303_Xylaria__C._insignis_LS_{11-4}__JQ760331.1
2445295	10400_Xylaria__C._insignis_BCI_{5-7}__JQ761018.1
2445321	9731_Xylaria__C._insignis_BCI_{1-12}__KC771484.1
2445312	B514_Xylaria__C._insignis_BCI_{12-9}__KC771484.1
2445289	Endolichenic_Sordariomycetes_sp._FL0567__Cladonia_evansii__JQ760290.1
2445276	Endolichenic_Sordariomycetes_sp._FL0621__Parmotrema_tinctorum__JQ760331.1
2445305	Endolichenic_Sordariomycetes_sp._FL1044__Cladonia_evansii__JQ760667.1
2445293	Endolichenic_Sordariomycetes_sp._FL1046__Cladonia_evansii__JQ760669.1
2445274	Endolichenic_Sordariomycetes_sp._FL1159__Parmotrema_rampoddense__JQ760777.1
2445265	Endolichenic_Sordariomycetes_sp._FL1330__Cladonia_evansii__JQ760948.1
2445303	Endolichenic_Sordariomycetes_sp._FL1401__Parmotrema_tinctorum__JQ761018.1
2445308	Endolichenic_Sordariomycetes_sp._NC1011__Lecanora_oreinoides__JQ761659.1
2445266	Endolichenic_Sordariomycetes_sp._NC1048__Cladonia_subtenuis__JQ761695.1
2445311	F0046_Xylaria__LS__JQ760340.1
2445307	F0072_Xylaria__LS__JQ761695.1
2445271	F0160_Xylaria__?_LS__JQ760667.1
2445281	Fungal_endophyte_STRI_ICBG_TK112_*_KF435403.1
2445264	Fungal_endophyte_STRI_ICBG_TK118_*_KF435345.1
2445254	Fungal_endophyte_STRI_ICBG_TK1326_*_KF435525.1
2445282	Fungal_endophyte_STRI_ICBG_TK1641_*_KF435709.1
2445288	Fungal_endophyte_STRI_ICBG_TK1644_*_KF435948.1
2445294	Fungal_endophyte_STRI_ICBG_TK281_*_KF435881.1
2445279	Fungal_endophyte_STRI_ICBG_TK315_*_KF435750.1
2445286	Fungal_endophyte_STRI_ICBG_TK387_*_KF435891.1
2445270	Fungal_endophyte_STRI_ICBG_TK568_*_KF435921.1
2445273	Fungal_endophyte_STRI_ICBG_TK582_*_KF435200.1
2445263	Fungal_endophyte_STRI_ICBG_TK654_*_KF436006.1
2445256	Fungal_endophyte_STRI_ICBG_TK656_*_KF435155.1
2445262	Fungal_endophyte_STRI_ICBG_TK685_*_KF435475.1
2445324	Fungal_endophyte_STRI_ICBG_TK703_*_KF436306.1
2445316	Fungal_endophyte_STRI_ICBG_TK714_*_KF436317.1
2445298	Fungal_endophyte_STRI_ICBG_TK736_*_KF436335.1
2445287	Fungal_endophyte_STRI_ICBG_TK976_*_KF436217.1
2445315	L399_Xylaria__C._insignis_LS_{11-NA}__KC771484.1
2445275	P0048_Xylaria__Psychotria_horizontalis_BCI__JQ760948.1
2445306	P0050_Xylaria__Psychotria_limonensis_BCI__JQ760777.1
2445260	P0067A_Xylaria__Psychotria_limonensis_BCI__JQ761018.1
2445277	P0079_Xylaria__Psychotria_limonensis_BCI__JQ760340.1
2445258	P0080_Xylaria__Psychotria_limonensis_BCI__JQ761018.1
2445314	P0103_Xylaria__Garcinia_madruno_BCI__JQ760669.1
2445317	P0105_Xylaria__Garcinia_intermedia_BCI__JQ761018.1
2445291	P0145_Xylaria__Garcinia_intermedia_BCI__JQ761018.1
2445278	P0160_Xylaria__Hybanthus_prunifolius_BCI__JQ760777.1
2445319	P0180_Xylaria__Erythroxylum_panamense_BCI__JQ760948.1
2445269	P0192_Xylaria__Hybanthus_prunifolius_BCI__JQ760669.1
2445325	P0199_Xylaria__Chrysophyllum_cainito_BCI__JQ760948.1
2445285	P0227_Xylaria__Chrysophyllum_cainito_BCI__JQ760777.1
2445301	P0242_Xylaria__Hybanthus_prunifolius_BCI__JQ761018.1
2445299	P0249_Xylaria__Chrysophyllum_cainito_BCI__JQ760948.1
2445292	P0285_Xylaria__Xylopia_macrantha_BCI__JQ761018.1
2445283	P0289B_Xylaria__Piper_reticulatum_BCI__JQ760948.1
2445318	P0362_Xylaria__Strychnos_panamensis_BCI__JQ760948.1
2445252	P0392_Xylaria__Piper_reticulatum_BCI__JQ760777.1
2445297	P0423_Xylaria__Cordia_alliodora_BCI__JQ761018.1
2445255	P0434_Xylaria__Hybanthus_prunifolius_BCI__JQ760340.1
2445268	P0458A_Xylaria__Trema_micrantha_BCI__JQ760290.1
2445313	P0481_Xylaria__Eugenia_oerstediana_BCI__JQ760889.1
2445322	P0485_Xylaria__Cordia_bicolor_BCI__JQ761018.1
2445290	P0502_Xylaria__Strychnos_panamensis_BCI__JQ760889.1
2445300	P0540_Xylaria__Trema_micrantha_BCI__JQ760948.1
2445272	P0578_Xylaria__Diospyros_artanthifolia_BCI__JQ760889.1
2445310	P0660_Xylaria__Cordia_bicolor_BCI__JQ760777.1
2445259	P0666_Xylaria__Trema_micrantha_BCI__JQ760777.1
2445267	P0732_Xylaria__Adelia_triloba_BCI__JQ760948.1
2445320	P0842_Xylaria__C._peltata_BCI__JQ760948.1
2445304	P0848_Xylaria__Parmeliaceae_sp._1_BCI__JQ760667.1
2445261	P0857_Xylaria__Parmeliaceae_sp._1_BCI__JQ761018.1
2445257	Sordariomycetes_sp._*_JQ760889.1
2445253	Xylaria_cubensis_*_GU373810.1
2445280	Xylaria_feejeensis_*_GU322452.1
2445323	Xylaria_feejeensis_*_GU322453.1
2445309	Xylaria_feejeensis_*_GU322454.1
2445284	Xylaria_laevis_*_KC771484.1