TreeBASE Search-Taxa in tree 98725 of the phylogeny or phylogenetic data in study 19714

@ARTICLE{TreeBASE2Ref26204, author = {Justin P Shaffer and Carolina Sarmiento and Paul-Camilo Zalamea and Rachel Elizabeth Gallery and Adam S Davis and David A Baltrus and A. Elizabeth Arnold}, title = {Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves}, year = {2016}, keywords = {Ascomycota, Barro Colorado Island, Cecropia, endobacteria, phylogenetic diversity, pioneers, symbiosis}, doi = {10.3389/fevo.2016.00116}, url = {http://}, pmid = {}, journal = {Frontiers in Ecology and Evolution}, volume = {4}, number = {116}, pages = {}, abstract = {Interactions between fungi and tropical trees are responsible for some of the most biodiverse communities on earth. These interactions occur in the presence of additional microbes that can modify fungal phenotypes, such as endohyphal bacteria. Here we examine the occurrence, diversity, and composition of endohyphal bacteria (EHB) in fungi that colonize seeds and leaves of plants in tropical forests. We use PCR and visual fluorescence to detect EHB among fungi, and a phylogenetic approach to explore the evolutionary relationships among seed- and leaf-inhabiting fungi and their bacterial partners. Analyses focusing on two prevalent orders of fungi (Hypocreales and Xylariales) revealed that seed- and leaf-inhabiting fungi have a shared evolutionary history, yet differ in the prevalence, richness, and composition of their endohyphal symbionts. Phylogenetic analyses detected that the EHB habit is widespread, here encompassing members of seven phyla of bacteria (including three classes of Proteobacteria). Occurring in seed- vs. leaf-associated fungi has not resulted in detectable structure in the evolution of EHB, and no congruence was observed in the phylogenetic relationships of these apparently facultative, horizontally transmitted symbionts. Our results are consistent with multiple origins of fungus-bacterium associations and argue for evaluating focal pairs to determine how particular EHB affect the establishment or maintenance of fungal symbioses in seeds and leaves.} }

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Taxa for tree 98725 of Study 19714

Citation title: "Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".

Study name: "Diversity, specificity, and phylogenetic relationships of endohyphal bacteria in fungi that inhabit tropical seeds and leaves".

This study is part of submission 19714 (Status: Published).

Taxa

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ID	Taxon Label	NCBI taxid	uBIO namebankID
2450209	10343_cl05_Fusarium__C._insignis_LS-BCI_{01}__NR_024734.1_*_e
2450176	2611_Dothidea__J._scopulorum_CHU__FJ422393_*_K
2450179	9026_Alternaria__P._orientalis_UA__FJ596644_*_L
2450169	9106_clB_Presussia__C._arizonica_UA__FJ267573_*_O
2450216	9745_cl06_Xylaria__C._insignis_BCI-BCI_{07}__NR_028706.1_*_x
2450202	9927_cl06_Fusarium__C._insignis_BCI-BCI_{14}__NR_028706.1_*_d
2450159	AK0197_4_Daldinia__P._glauca_AK__NR_024662.1
2450192	AK1067_3_Daldinia__U._hyperborea_AK__NR_024662.1
2450155	AK1159_1_Daldinia__P._schreberi_AK__NR_024662.1
2450190	AK1306_3_Daldinia__P._aphthosa_AK__NR_024662.1
2450175	AK1683_9_Daldinia__B._nana__NR_024662.1
2450210	Acinetobacter_calcoaceticus_*_NR_042387.1
2450183	Acinetobacter_guillouiae_*_NR_117626.1
2450186	Acinetobacter_haemolyticus_*_NR_026207.1
2450153	Acinetobacter_johnsonii_*_NR_117624.1
2450212	Acinetobacter_oleivorans_*_NR_102814.1
2450196	Acinetobacter_sp._B2070_*_JX266367.1
2450157	Acinetobacter_sp._MB22_*_emb_FR677019.1
2450171	Alkanindiges_illinoisensis_*_NR_025254.1
2450214	B040_cl08_Fusarium__C._insignis_BCI-BCI_{08}__NR_029005.1_*_i
2450150	B043_cl03_Fusarium__C._insignis_BCI-BCI_{08}__NR_043919.1_*_a
2450197	Enhydrobacter_aerosaccus_*_NR_029005.1
2450204	Enterobacter_asburiae_*_NR_024640.1
2450205	Escherichia_coli_ATCC11775T_*_NR_024570
2450189	L044_cl01_Fusarium__C._insignis_LS-BCI_{01}__NR_026207.1_*_e
2450158	L044_cl15_Fusarium__C._insignis_LS-BCI_{01}__NR_028986.1_*_e
2450184	P0249_cl07_Xylaria__C._cainito_BCI__FJ840535.1_*_w
2450200	P0259_Xylaria__G._madruno_BCI__NR_028985.1_*_x
2450151	P0277_cl08_Fusarium__G._intermedia_BCI__JX566550.1_*_v
2450161	P0451_cl06_Fusarium__E._oerstediana_BCI__NR_028706.1_*_j
2450182	P0538_cl02_Fusarium__C._argentum_BCI__NR_029005.1_*_j
2450165	P0538_cl03_Fusarium__C._argentum_BCI__NR_026207.1_*_j
2450167	P0857_cl05_Xylaria__Parmeliaceae1_BCI__DQ536522.2_*_w
2450177	P0857_cl12_Xylaria__Parmeliaceae1_BCI__JX266367.1_*_w
2450215	P3139_cl02_Fusarium__H._triandra_BCI__DQ356504.1_*_p
2450198	P3139_cl11_Fusarium__H._triandra_BCI__JX094167.1
2450187	PS0022_cl01_Fusarium__A._membranaceae_BCI_Armour-SW__NR_074739.1_*_a
2450152	PS0427_cl06_Fusarium__C._insignis_BCI_Pearson-NW__NR_028706.1_*_k
2450174	PS0434_cl01_Fusarium__C._insignis_BCI_Pearson-SE__NR_025254.1_*_a
2450180	PS0434_cl04_Fusarium__C._insignis_BCI_Pearson-SE__NR_121767.1_*_a
2450193	PS0447_cl03_Fusarium__C._insignis_BCI_Armour-NW__NR_117626.1_*_a
2450173	PS0615_cl03_Fusarium__T._micrantha_bl_BCI_Zetek-SE__NR_117624.1_*_a
2450207	PS0615_cl04_Fusarium__T._micrantha_bl_BCI_Zetek-SE__NR_024927.1_*_a
2450163	Pantoea_eucalypti_*_EF688009.1
2450199	Perlucidibaca_piscinae_*_NR_043919.1
2450154	Pseudomonas_alcaligenes_*_NR_043419.1
2450178	Pseudomonas_congelans_*_NR_028985.1
2450185	Pseudomonas_denitrificans_*_NR_102805.1
2450170	Pseudomonas_entomophila_*_NR_102854.1
2450181	Pseudomonas_libanensis_*_NR_024901.1
2450201	Pseudomonas_mendocina_*_FJ840535.1
2450166	Pseudomonas_migulae_*_NR_024927.1
2450188	Pseudomonas_monteilii_*_GU191931.1
2450172	Pseudomonas_monteilii_*_NR_024910.1
2450208	Pseudomonas_monteilii_*_NR_121767.1
2450156	Pseudomonas_nitroreducens_*_NR_042435.1
2450160	Pseudomonas_panipatensis_*_NR_044209.1
2450162	Pseudomonas_plecoglossicida_*_DQ095907.1
2450164	Pseudomonas_putida_*_AY332610.1
2450168	Pseudomonas_putida_*_NR_074596.1
2450206	Pseudomonas_putida_*_NR_074739.1
2450149	Pseudomonas_sp._2007_*_JX566550.1
2450194	Pseudomonas_sp._BIHB_756_*_DQ536522.2
2450213	Pseudomonas_sp._CC5_*_DQ356504.1
2450195	Pseudomonas_stutzeri_*_JX094167.1
2450203	Pseudomonas_syringae_*_AJ308316
2450211	Pseudomonas_taiwanensis_*_JF683679.1
2450191	Pseudomonas_veronii_*_NR_028706.1