@ARTICLE{TreeBASE2Ref22832,
author = {Daniel J Layton and Elizabeth A. Kellogg},
title = {Morphological, phylogenetic, and ecological diversity of the new model species Setaria viridis (Poaceae: Paniceae) and its close relatives},
year = {2014},
keywords = {},
doi = {},
url = {http://},
pmid = {},
journal = {American Journal of Botany},
volume = {},
number = {},
pages = {},
abstract = {? Premise of the study: Species limits of the emerging model organism Setaria viridis (tribe Paniceae, subtribe Cenchrinae) are not well defined. It is thought to be related to S. adhaerens, S. faberi, S. verticillata, , and S. verticilliformis, and in North America occurs with the morphologically similar S. pumila. An integrated approach was taken to evaluate its variation and relationships with the other taxa.
? Methods: Statistical morphology, flow cytometry, molecular phylogenetics, and growth experiments were employed to examine the group?s physical variation, polyploidy, evolutionary relationships, and drought ecology, respectively.
? Key results: Setaria viridis contributed one genome to the tetraploids S. faberi, S. verticillata, and S. verticilliformis; the other genome of the latter two was contributed by S. adhaerens. S. pumila is unrelated. Morphologically, S. viridis is most similar to S. faberi, but all tested accession of S. viridis were diploid, whereas those of S. faberi were all tetraploid. Principal components analysis of 70 morphological characters consistently separated S. viridis from S. faberi, largely by spikelet characters. The diagnostic morphological characters are not affected by watering. Setaria faberi is far more sensitive to drought in terms of mortality and morphological stunting than S. viridis or S. pumila.
? Conclusions: Setaria viridis is a diploid species and has contributed to several polyploid derivatives. The most morphologically similar of the polyploids is S. faberi, which differs in spikelet features, phylogenetics, genome size, and ecological response to drought. Researchers using field collected S. viridis as a model organism will benefit from the clear delimitation provided in this study.
}
}
Taxa for Study 15334
Citation title:
"Morphological, phylogenetic, and ecological diversity of the new model species Setaria viridis (Poaceae: Paniceae) and its close relatives".
Study name:
"Morphological, phylogenetic, and ecological diversity of the new model species Setaria viridis (Poaceae: Paniceae) and its close relatives".
This study is part of submission 15334
(Status: Published).
Taxa
ID |
Taxon Label |
NCBI taxid |
uBIO namebankID |
1389843 |
Cenchrus calyculatus A a |
|
|
1389791 |
Cenchrus calyculatus A b |
|
|
1389829 |
Cenchrus calyculatus E a |
|
|
1389831 |
Cenchrus calyculatus E b |
|
|
1389896 |
Cenchrus ciliaris 1 E a |
35872
|
2773167
|
1389893 |
Cenchrus ciliaris 1 E b |
35872
|
2773167
|
1389787 |
Cenchrus ciliaris 2 D a |
35872
|
2773167
|
1389766 |
Cenchrus ciliaris 2 D b |
35872
|
2773167
|
1389868 |
Cenchrus echinatus B a |
|
|
1389783 |
Cenchrus echinatus B b |
|
|
1389852 |
Cenchrus echinatus D |
|
|
1389886 |
Cenchrus myosuroides D |
|
|
1389876 |
Cenchrus myosuroides E a |
|
|
1389825 |
Cenchrus myosuroides E b |
|
|
1389860 |
Cenchrus pilosus E a |
|
|
1389811 |
Cenchrus pilosus G a |
|
|
1389869 |
Cenchrus setigerus F a |
|
|
1389875 |
Cenchrus setigerus F b |
|
|
1389817 |
Chaetium bromoides A a |
|
|
1389755 |
Chaetium bromoides E a |
|
|
1389850 |
Ixophorus unisetus 1 T a |
279312
|
2661745
|
1389856 |
Ixophorus unisetus 1 T b |
279312
|
2661745
|
1389851 |
Ixophorus unisetus 1 T c |
279312
|
2661745
|
1389822 |
Ixophorus unisetus 1 T d |
279312
|
2661745
|
1389878 |
Ixophorus unisetus 2 O a |
279312
|
2661745
|
1389841 |
Ixophorus unisetus 2 O b |
279312
|
2661745
|
1389859 |
Ixophorus unisetus 2 O c |
279312
|
2661745
|
1389887 |
Panicum miliaceum I a |
|
|
1389861 |
Paspalidium aversum F |
|
|
1389794 |
Paspalidium aversum G a |
|
|
1389754 |
Paspalidium aversum G b |
|
|
1389810 |
Paspalidium distans 1 F a |
420289
|
2676501
|
1389867 |
Paspalidium distans 1 G a |
420289
|
2676501
|
1389803 |
Paspalidium distans 2 F a |
420289
|
2676501
|
1389874 |
Paspalidium distans 2 G a |
420289
|
2676501
|
1389768 |
Paspalidium jubiflorum E a |
|
|
1389839 |
Paspalidium jubiflorum G a |
|
|
1389824 |
Pennisetum alopecuroides B a |
|
|
1389799 |
Pennisetum alopecuroides B b |
|
|
1389826 |
Pennisetum alopecuroides C |
|
|
1389761 |
Pennisetum flaccidum 1 B |
192627
|
2671334
|
1389789 |
Pennisetum flaccidum 1 C a |
192627
|
2671334
|
1389765 |
Pennisetum flaccidum 1 C b |
192627
|
2671334
|
1389889 |
Pennisetum flaccidum 2 D a |
192627
|
2671334
|
1389818 |
Pennisetum glaucum E a |
|
|
1389777 |
Pennisetum glaucum E b |
|
|
1389773 |
Pennisetum lanatum D |
|
|
1389871 |
Pennisetum lanatum E |
|
|
1389834 |
Pennisetum villosum F |
|
|
1389895 |
Pseudoraphis paradoxa F a |
|
|
1389870 |
Pseudoraphis paradoxa F b |
|
|
1389756 |
Pseudoraphis spinescens F a |
|
|
1389812 |
Pseudoraphis spinescens F b |
|
|
1389790 |
Setaria adhaerens 1 O Doust 1401 |
560831
|
2672080
|
1389837 |
Setaria adhaerens D00 001 |
560831
|
2672080
|
1389892 |
Setaria adhaerens D99 007 |
560831
|
2672080
|
1389788 |
Setaria barbata A |
|
|
1389832 |
Setaria barbata E |
|
|
1389780 |
Setaria faberi Kellogg 1247 A |
|
|
1389864 |
Setaria faberi Kellogg 1247 B |
|
|
1389805 |
Setaria faberi Layton 154 A |
|
|
1389840 |
Setaria faberi Layton 154 B |
|
|
1389836 |
Setaria faberi Nee 57234 1 A |
|
|
1389835 |
Setaria faberi Nee 57234 1 B |
|
|
1389848 |
Setaria faberi Vela 70 1 A |
|
|
1389821 |
Setaria faberi Vela 70 1 B |
|
|
1389853 |
Setaria geniculata G a |
|
|
1389854 |
Setaria grisebachii F a |
|
|
1389844 |
Setaria italica 1 H Doust 1403 |
4555
|
466093
|
1389802 |
Setaria italica 2 F a Doust 1361 |
4555
|
466093
|
1389827 |
Setaria italica ISE 1107 |
|
|
1389809 |
Setaria palmifolia B |
|
|
1389865 |
Setaria palmifolia F a |
|
|
1389796 |
Setaria palmifolia F b |
|
|
1389888 |
Setaria parviflora G a |
|
|
1389880 |
Setaria parviflora G b |
|
|
1389763 |
Setaria parviflora Kellogg 1259 A |
|
|
1389762 |
Setaria parviflora Kellogg 1259 B |
|
|
1389806 |
Setaria poiretiana 1 B a |
192630
|
2661322
|
1389798 |
Setaria poiretiana 1 B b |
192630
|
2661322
|
1389785 |
Setaria poiretiana 1 F a |
192630
|
2661322
|
1389863 |
Setaria poiretiana 2 B a |
192630
|
2661322
|
1389759 |
Setaria poiretiana 2 B b |
192630
|
2661322
|
1389772 |
Setaria poiretiana 2 G a |
192630
|
2661322
|
1389891 |
Setaria poiretiana 2 G b |
192630
|
2661322
|
1389872 |
Setaria pumila D a |
|
|
1389808 |
Setaria pumila D b |
|
|
1389797 |
Setaria pumila E a |
|
|
1389830 |
Setaria pumila E b |
|
|
1389820 |
Setaria pumila ME036 1 A |
305353
|
2669322
|
1389845 |
Setaria pumila ME036 1 B |
305353
|
2669322
|
1389758 |
Setaria sp ISE 1679 A |
|
|
1389877 |
Setaria sp ISE 1679 B |
|
|
1389849 |
Setaria sp ISE 1679 B1 |
|
|
1389779 |
Setaria sphacelata A a |
|
|
1389890 |
Setaria sphacelata A b |
|
|
1389804 |
Setaria sphacelata D |
|
|
1389881 |
Setaria verticillata 2 G a Doust 1360 |
149379
|
2661303
|
1389753 |
Setaria verticillata D00 115 A |
149379
|
2661303
|
1389828 |
Setaria verticillata D00 115 B |
149379
|
2661303
|
1389838 |
Setaria verticillata D97 007 A |
149379
|
2661303
|
1389778 |
Setaria verticillata D97 007 B |
149379
|
2661303
|
1389781 |
Setaria verticillata D99 025 A |
149379
|
2661303
|
1389784 |
Setaria verticillata D99 025 B |
149379
|
2661303
|
1389866 |
Setaria verticillata SETAD2 A |
149379
|
2661303
|
1389769 |
Setaria verticillata SETAD2 B |
149379
|
2661303
|
1389774 |
Setaria verticillata SETVE2 A |
149379
|
2661303
|
1389767 |
Setaria verticillata SETVE2 B |
149379
|
2661303
|
1389813 |
Setaria verticilliformis D00 116 A2 |
560862
|
2676617
|
1389885 |
Setaria verticilliformis D00 116 B |
560862
|
2676617
|
1389884 |
Setaria viridis 1 H a Doust 1404 |
4556
|
2661302
|
1389771 |
Setaria viridis 2 D a PI 408811 |
4556
|
2661302
|
1389793 |
Setaria viridis Ahart 17139 1 |
|
|
1389855 |
Setaria viridis K 1211 S |
|
|
1389873 |
Setaria viridis K 1235 |
|
|
1389775 |
Setaria viridis ME014 1 |
4556
|
2661302
|
1389847 |
Setaria viridis Thompson 1 |
|
|
1389819 |
Setaria viridis Yang 1108 |
|
|
1389760 |
Setaria viridis Yang 8014 |
|
|
1389757 |
Spinifex sericeus H |
|
|
1389776 |
Spinifex sericeus I a |
|
|
1389795 |
Stenotaphrum secundatum I a |
|
|
1389786 |
Stenotaphrum secundatum I b |
|
|
1389894 |
Zuloagea bulbosa 1 O |
|
|
1389814 |
Zuloagea bulbosa 1 R a |
|
|
1389800 |
Zuloagea bulbosa 1 R b |
|
|
1389792 |
Zuloagea bulbosa 1 R c |
|
|
1389770 |
Zuloagea bulbosa 1 R d |
|
|
1389807 |
Zuloagea bulbosa 2 O |
|
|
1389815 |
Zuloagea bulbosa 2 R a |
|
|
1389846 |
Zuloagea bulbosa 2 R b |
|
|
1389842 |
Zuloagea bulbosa 2 R c |
|
|
1389857 |
Zuloagea bulbosa 3 O a |
|
|
1389862 |
Zuloagea bulbosa 3 R a |
|
|
1389833 |
Zuloagea bulbosa 3 R b |
|
|
1389882 |
Zuloagea bulbosa 3 R c |
|
|
1389883 |
Zuloagea bulbosa 4 C |
|
|
1389764 |
Zuloagea bulbosa 4 D |
|
|
1389879 |
Zuloagea bulbosa 4 F a |
|
|
1389816 |
Zuloagea bulbosa 4 F b |
|
|
1389801 |
Zygochloa paradoxa 1 G a |
420298
|
8960300
|
1389782 |
Zygochloa paradoxa 1 G b |
420298
|
8960300
|
1389858 |
Zygochloa paradoxa 2 G a |
420298
|
8960300
|
1389823 |
Zygochloa paradoxa 2 G b |
420298
|
8960300
|