TreeBASE Search-Trees for study 17164

@ARTICLE{TreeBASE2Ref24242, author = {Gloria Torres Cortes and Stefano Ghignone and Paola Bonfante and Arthur Schuessler}, title = {Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: trans-kingdom gene transfer in an ancient mycoplasma-fungus association.}, year = {2015}, keywords = {arbuscular mycorrhizal fungi; endobacteria; genome; intracellular symbiont; horizontal gene transfer; Mollicutes; Mycoplasma.}, doi = {10.1073/pnas.1501540112}, url = {}, pmid = {25964335}, journal = {Proceedings of the National Academy of Sciences of the United States of America}, volume = {}, number = {}, pages = {}, abstract = {For more than 450 million years, arbuscular mycorrhizal fungi (AMF) have formed intimate, mutualistic symbioses with the vast majority of land plants and are major drivers in almost all terrestrial ecosystems. The obligate plant-symbiotic AMF host additional symbionts, so-called Mollicutes-related endobacteria (MRE). To uncover putative functional roles of these widespread but yet enigmatic MRE, we sequenced the genome of DhMRE living in the AMF Dentiscutata heterogama. Multilocus phylogenetic analyses showed that MRE form a previously unidentified lineage sister to the hominis group of Mycoplasma species. DhMRE possesses a strongly reduced metabolic capacity with 55% of the proteins having unknown function, which reflects unique adaptations to an intracellular lifestyle. We found evidence for transkingdom gene transfer between MRE and their AMF host. At least 27 annotated DhMRE proteins show similarities to nuclear-encoded proteins of the AMF Rhizophagus irregularis, which itself lacks MRE. Nuclear-encoded homologs could moreover be identified for another AMF, Gigaspora margarita, and surprisingly, also the non-AMF Mortierella verticillata. Our data indicate a possible origin of the MRE-fungus association in ancestors of the Glomeromycota and Mucoromycotina. The DhMRE genome encodes an arsenal of putative regulatory proteins with eukaryotic-like domains, some of them encoded in putative genomic islands. MRE are highly interesting candidates to study the evolution and interactions between an ancient, obligate endosymbiotic prokaryote with its obligate plant-symbiotic fungal host. Our data moreover may be used for further targeted searches for ancient effector-like proteins that may be key components in the regulation of the arbuscular mycorrhiza symbiosis. } }

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Trees for Study 17164

Citation title: "Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: trans-kingdom gene transfer in an ancient mycoplasma-fungus association.".

Study name: "Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: trans-kingdom gene transfer in an ancient mycoplasma-fungus association.".

This study is part of submission 17164 (Status: Published).

Trees

ID	Tree Label	Tree Title	Tree Type	Tree Kind	Taxa
Tr88329	Fig. S6	Phylogenetic reconstruction based on the AIG domain of the proteins described in the DhMre genome draft.	Single	Species Tree	View Taxa
Tr88328	Fig. 2	Maximum likelihood phylogenetic reconstruction of the protein kinases candidates for horizontal gene transfer	Single	Species Tree	View Taxa
Tr86092	Fig 1	Phylogenetic placement of DhMRE inferred by maximum likelihood phylogenetic analysis	Single	Species Tree	View Taxa