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Analyses for Study 12354

Citation title: "Phylogenetic relationships of Dysaphis pyri (Boyer de Fonscolombe) and Dysaphis reaumuri (Mordvilko) (Hemiptera, Sternorrhyncha: Aphididae): COI and EF-1α evidence".

Study name: "Phylogenetic relationships of Dysaphis pyri (Boyer de Fonscolombe) and Dysaphis reaumuri (Mordvilko) (Hemiptera, Sternorrhyncha: Aphididae): COI and EF-1α evidence".

This study is part of submission 12354 (Status: Published).

Analyses

Analysis 1

Analysis details

Name

Input data

1 Input object(s)

Analysis step

Dysaphis COI ML --

Output data

1 Output object(s)

Analysis 2

Analysis details

Name

Input data

1 Input object(s)

Analysis step

Dysaphis COI MP --

Output data

1 Output object(s)

Analysis 3

Analysis details

Name

Input data

1 Input object(s)

Analysis step

Dysaphis EF1alpha BI --

Step details

Name

Software used

Name
Algorithm
Commands
begin mrbayes; set autoclose=yes; set nowarn=yes; [! No molecular clock --------------------------------------- ] lset nst=6 rates=gamma; prset brlenspr=unconstrained:Exp(10.0); mcmc nruns=1 ngen=1000000 samplefreq=1000 file=mrbayes.nex.noclock.mb; sump burnin=250; sumt burnin=250; [! Uniform molecular clock ---------------------------------- ] prset brlenspr=clock:uniform; prset treeheightpr=Exp(1.0); mcmc nruns=1 ngen=1000000 samplefreq=1000 file=mrbayes.nex.clock.mb; sump burnin=250; sumt burnin=250; [! Coalescence molecular clock, run 1 ----------------------- ] prset brlenspr=clock:coalescence; mcmc nruns=1 ngen=2000000 samplefreq=1000 file=mrbayes.nex.coalesence1.mb; sump burnin=500; sumt burnin=500; quit; end;

Output data

1 Output object(s)

Analysis 4

Analysis details

Name

Input data

1 Input object(s)

Analysis step

Dysaphis EF1alpha ML --

Output data

1 Output object(s)

Analysis 5

Analysis details

Name

Input data

1 Input object(s)

Analysis step

Dysaphis EF1alpha MP --

Output data

1 Output object(s)

Analysis 6

Analysis details

Name

Input data

1 Input object(s)

Analysis step

Dysaphis COI BI --

Step details

Name

Software used

Name
Algorithm
Commands
begin mrbayes; set autoclose=yes; set nowarn=yes; [! No molecular clock --------------------------------------- ] lset nst=6 rates=gamma; prset brlenspr=unconstrained:Exp(10.0); mcmc nruns=1 ngen=1000000 samplefreq=1000 file=mrbayes.nex.noclock.mb; sump burnin=250; sumt burnin=250; [! Uniform molecular clock ---------------------------------- ] prset brlenspr=clock:uniform; prset treeheightpr=Exp(1.0); mcmc nruns=1 ngen=1000000 samplefreq=1000 file=mrbayes.nex.clock.mb; sump burnin=250; sumt burnin=250; [! Coalescence molecular clock, run 1 ----------------------- ] prset brlenspr=clock:coalescence; mcmc nruns=1 ngen=2000000 samplefreq=1000 file=mrbayes.nex.coalesence1.mb; sump burnin=500; sumt burnin=500; quit; end;

Output data