Analyses for Study

Analyses

Analysis 1

Analysis details

Name

Input data 1 Input object(s) alignment Avh120

Analysis step Avh120 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Kimura 2-parameter substitution model with a uniform rate variation Bootstrap analysis (1000 replication)

Output data 1 Output object(s) Fig. 3 Avh120

Analysis 2

Analysis details

Name

Input data 1 Input object(s) alignment Avh121

Analysis step Avh121 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Kimura 2-parameter substitution model with a gamma-distributed rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 3 Avh121

Analysis 3

Analysis details

Name

Input data 1 Input object(s) alignment Btub

Analysis step Btub -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Tamura 3-parameter substitution model with a gamma-distributed rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 3 Btub

Analysis 4

Analysis details

Name

Input data 1 Input object(s) alignment Cox1

Analysis step Cox1 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Tamura-Nei substitution model with a gamma-distributed rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 2 Cox1

Analysis 5

Analysis details

Name
Notes

Input data 1 Input object(s) alignment Cox1-Cox2-Prv8-Prv9-Prv11

Analysis step Cox1-Cox2-Prv8-Prv9-Prv11 -- Step details Name Notes Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Tamura 3-parameter substitution model with a gamma-distributed rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 2 Cox1-Cox2-Prv8-Prv9-Prv11

Analysis 6

Analysis details

Name

Input data 1 Input object(s) alignment Trp

Analysis step trp1 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Tamura 3-parameter substitution model with a gamma-distributed rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 3 Trp1

Analysis 7

Analysis details

Name

Input data 1 Input object(s) alignment Prv9

Analysis step Prv9 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Hasegawa-Kishino-Yano model substitution model with a uniform rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 2 Prv9

Analysis 8

Analysis details

Name

Input data 1 Input object(s) alignment Prv11

Analysis step Prv11 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Tamura 3-parameter substitution model with a gamma-distributed rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 2 Prv11

Analysis 9

Analysis details

Name

Input data 1 Input object(s) alignment Cox2

Analysis step Cox2 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Tamura 3-parameter substitution model with a gamma-distributed rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 2 Cox2

Analysis 10

Analysis details

Name

Input data 1 Input object(s) alignment Prv8

Analysis step Prv8 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Tamura 3-parameter substitution model with a uniform rate variation Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 2 Prv8

Analysis 11

Analysis details

Name

Input data 1 Input object(s) alignment gwEuk.30.30.1

Analysis step gwEuk.30.30.1 -- Step details Name Software used Name Version Algorithm --- Please Select --- maximum likelihood parsimony bayesian inference minimum evolution neighbor joining UPGMA other algorithm Commands Kimura 2-parameter substitution model Bootstrap analysis (1000 replications)

Output data 1 Output object(s) Fig. 3 gwEuk