TreeBASE Search-Trees for study 15701

@ARTICLE{TreeBASE2Ref23121, author = {Joyce H. C. Woudenberg and Mariette Truter and Johannes (Ewald) Zacharias Groenewald and Pedro W. Crous}, title = {Large-spored Alternaria pathogens in section Porri disentangled}, year = {2014}, keywords = {Alternaria, early blight of potato, early blight of tomato, leaf and stem blight of sweet potato, multi-gene phylogeny, purple blotch of onion}, doi = {}, url = {http://}, pmid = {}, journal = {Studies in Mycology}, volume = {79}, number = {}, pages = {}, abstract = {The omnipresent fungal genus Alternaria was recently divided into 24 sections based on molecular and morphological data. Alternaria sect. Porri is the largest section, containing almost all Alternaria species with medium to large conidia and long beaks, some of which are important plant pathogens (e.g. Alternaria porri, A. solani and A. tomatophila). We constructed a multi-gene phylogeny on parts of the ITS, GAPDH, RPB2, TEF1 and Alt a 1 gene regions, which, supplemented with morphological and cultural studies, forms the basis for species recognition in sect. Porri. Our data reveal 63 species, of which 10 are newly described in sect. Porri, and 27 species names are synonymised. The three known Alternaria pathogens causing early blight on tomato all cluster in one clade, and are synonymised under the older name, A. linariae. Alternaria protenta, a species formerly only known as pathogen on Helianthus annuus, is also reported to cause early blight of potato, together with A. solani and A. grandis. Two clades with isolates causing purple blotch of onion are confirmed as A. allii and A. porri, but the two species cannot adequately be distinguished based on the number of beaks and branches as suggested previously. This is also found among the pathogens of Passifloraceae, which are reduced from four to three species. In addition to the known pathogen of sweet potato, A. bataticola, three more species are delineated of which two are newly described. A new Alternaria section is also described, comprising two large-spored Alternaria species with concatenate conidia.} }

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Trees for Study 15701

Citation title: "Large-spored Alternaria pathogens in section Porri disentangled".

Study name: "Large-spored Alternaria pathogens in section Porri disentangled".

This study is part of submission 15701 (Status: Published).

Trees

ID	Tree Label	Tree Title	Tree Type	Tree Kind	Taxa
Tr76951	RAxML GAPDH	Tr76951			View Taxa
Tr76965	MrBayes Alt a 1	Tr76965			View Taxa
Tr76967	MrBayes RPB2	Tr76967			View Taxa
Tr76950	MrBayes ITS	Tr76950			View Taxa
Tr76949	MrBayes concatenated dataset	Large-spored Alternaria pathogens in section Porri	Single	Species Tree	View Taxa
Tr76960	MrBayes GAPDH	Tr76960			View Taxa
Tr76964	MrBayes TEF1	Tr76964			View Taxa
Tr76962	RAxML ITS	Tr76962			View Taxa
Tr76963	RAxML TEF1	Tr76963			View Taxa
Tr76968	RAxML RPB2	Tr76968			View Taxa
Tr76961	RAxML concatenated dataset	Tr76961			View Taxa
Tr76966	RAxML Alt a 1	Tr76966			View Taxa