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Authors Year Title Journal/Publisher
S10084 Bleidorn C., Podsiadlowski L., Zhong M. , et al. 2009 On the phylogenetic position of Myzostomida: can 77 genes get it wrong? BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10087 San mauro D., Vences M., Alcobendas M. , et al. 2005 Initial diversification of living amphibians predated the breakup of Pangaea American Naturalist Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1013 Anderson F., Cordoba A., Thollesson M. 2004 Bilaterian phylogeny based on analyses of a region of the sodium-potassium ATPase alpha subunit gene. Journal of Molecular Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10150 Phillips M., Bennett T., Lee M. 2009 Molecules, morphology and ecology indicate a recent, amphibious ancestry for echidnas Proceedings of the National Academy of Sciences of the United States of America Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10171 Stern A., Mayrose I., Penn O. , et al. 2010 An Evolutionary Analysis of Lateral Gene Transfer in Thymidylate Synthase Enzymes. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1019 Susko E., Field C., Blouin C. , et al. 2003 Estimation of Rates-Across-Sites Distributions in Phylogenetic Substitution Models. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1021 Yang Z., Yoder A.D. 2003 Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10229 Hausdorf B., Helmkampf M., Nesnidal M. , et al. 2010 Phylogenetic relationships within the lophophorate lineages (Ectoprocta, Brachiopoda and Phoronida). Molecular Phylogenetics and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10231 Kurabayashi A., Yoshikawa N., Sato N. , et al. 2010 Complete mitochondrial DNA sequence of the endangered frog Odorrana ishikawae (family Ranidae) and unexpected diversity of mt gene arrangements in ranids. Molecular Phylogenetics and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10281 Valles Y., Giani V., Cho S. , et al. 2010 Evolutionary dynamics of the Wnt gene family: a lophotrochozoan perspective. Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1029 Steppam S., Storz B., Hoffmann R. 2003 Nuclear DNA phylogeny of the squirrels (Mammalia: Rodentia) and the evolution of arboreality using c-myc and RAG1. Molecular Phylogenetics and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S10319 San mauro D. 2010 A multilocus timescale for the origin of extant amphibians Molecular Phylogenetics and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10436 Nesnidal M., Helmkampf M., Bruchhaus I. , et al. 2010 Compositional Heterogeneity and Phylogenomic Inference of Metazoan Relationships Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10454 Evans N.M., Cartwright P. 2010 The Phylogenetic Position of Myxozoa: Exploring Conflicting Signals in Phylogenomic and Ribosomal Datasets Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S10500 Makowsky R.A., Cox C., Roelke C. , et al. 2010 Analyzing the Relationship between Sequence Divergence and Nodal Support using Bayesian Phylogenetic Analyses Molecular Phylogenetics and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S10507 Meusemann K., Von reumont B., Simon S. , et al. 2010 A phylogenomic approach to resolve the arthropod tree of life Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10562 Parfrey L.W., Grant J.R., Tekle Y.I. , et al. 2010 Broadly Sampled Multigene Analyses Yield a Well-resolved Eukaryotic Tree of Life Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10791 Casewell N.R., Wagstaff S.C., Harrison R.A. , et al. 2010 Gene tree parsimony of multi-locus snake venom protein families reveals species tree conflict as a result of multiple parallel gene loss Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S10869 Rowe K.C. 2011 Recent and Rapid Speciation with limited Morphological Disparity in the Genus Rattus Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S10986 Struck T.H., Paul C., Hill N. , et al. 2011 Phylogenomic analyses unravel annelid evolution Nature Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S10996 Nesnidal M., Helmkampf M., Bruchhaus I. , et al. 2011 The complete mitochondrial genome of Flustra foliacea (Ectoprocta, Cheilostomata) ? compositional bias affects phylogenetic analyses of lophotrochozoan relationships BMC Genomics Submission Information Download Reconstructed NEXUS File Download NeXML File
S11114 Pyron R.A. 2011 Divergence-Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11208 Sekimoto S., Rochon D., Long J.E. , et al. 2011 A multigene phylogeny of Olpidium and its implications for early fungal evolution BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11297 Roos C., Zinner D., Kubatko L. , et al. 2011 Nuclear versus Mitochondrial DNA: Evidence for Hybridization in Colobine Monkeys BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11336 Katz L.A., Grant J.R., Parfrey L.W. , et al. 2011 Subulatomonas tetraspora nov. gen. nov. sp. is a member of a previously unrecognized major clade of eukaryotes Protist Submission Information Download Reconstructed NEXUS File Download NeXML File
S11362 Badets M., Whittington I., Lalubin F. , et al. 2011 Correlating Early Evolution of Parasitic Platyhelminths to Gondwana Break-up Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1137 Steppan S., Adkins R., Anderson J. 2004 Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11394 Mcdonald T.R., Dietrich F., Lutzoni F. 2011 Multiple horizontal gene transfers of ammonium transporters/ammonia permeases from prokaryotes to eukaryotes: toward a new functional and evolutionary classification Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S11399 Vogel H., Altincicek B., Gl?ckner G. , et al. 2011 A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella BMC Genomics Submission Information Download Reconstructed NEXUS File Download NeXML File
S11415 Zhou X., Xu S., Xu J. , et al. 2011 Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the Laurasiatherian mammals Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S11512 Vinther J., Sperling E.A., Briggs D.E. , et al. 2011 A molecular paleobiological hypothesis to the origin of aplacophorans and their derivation from chiton-like ancestors Proceedings of the Royal Society B Submission Information Download Reconstructed NEXUS File Download NeXML File
S1153 Yoder A.D., Yang Z. 2004 Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context. Molecular Ecology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1167 Qu X., Christ B. 2004 Genetic variation and phylogeny of Spongospora subterranea f. sp. subterranea based on ribosomal DNA sequence analysis. American Journal of Potato Research Submission Information Download Reconstructed NEXUS File Download NeXML File
S11672 Miyamoto M.M., Porter C.A., Goodman M. 2000 c-Myc Gene Sequences and the Phylogeny of Bats and Other Eutherian Mammals. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11689 Takishita K., Martin K., Komatsuzaki H. , et al. 2011 Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of ?amitochondriate? diplomonads and retortamonads Protist Submission Information Download Reconstructed NEXUS File Download NeXML File
S11742 Pyron R.A., Wiens J.J. 2011 A large-scale phylogeny of Amphibia including over 2800 species, and a revised classification of extant frogs, salamanders, and caecilians Molecular Phylogenetics Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11872 Meredith R.W., Janecka J., Gatesy J. , et al. 2011 Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification Science Submission Information Download Reconstructed NEXUS File Download NeXML File
S11920 Delsuc F., Vizca?no S.F., Douzery E.J. 2004 Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans. BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11961 Schneider A., Cannarozzi G.M. 2009 Support Patterns from Different Outgroups Provide a Strong Phylogenetic Signal Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S11977 Shekelle M., Meier R., Wahyu I. , et al. 2010 Molecular Phylogenetics and Chronometrics of Tarsiidae Based on 12S mtDNA Haplotypes: Evidence for Miocene Origins of Crown Tarsiers and Numerous Species within the Sulawesian Clade International Journal of Primatology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12003 Agnarsson I., Zambrana-torrelio C.M., Flores salda?a N.P. , et al. 2011 A time-calibrated species-level phylogeny of bats (Chiroptera, Mammalia) PLoS Currents: Tree of Life Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12028 Weichselbaumer M., Willmann M., Reifinger M. , et al. 2011 Phylogenetic discordance of human and canine carcinoembryonic antigen (CEA, CEACAM) families, but striking identity of the CEA receptors will impact comparative oncology studies. PLoS Currents: Tree of Life. Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12097 Derelle R., Lang B.F. 2011 Rooting the eukaryotic tree with mitochondrial and bacterial proteins Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S12156 Faircloth B.C., Mccormack J.E., Crawford N.G. , et al. 2011 Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales. Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12161 Yoder A.D., Burns M.M., Zehr S. , et al. 2003 Single origin of Malagasy Carnivora from an African ancestor. Nature Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12169 Mariadassou M., Bar-hen A., Kishino H. 2012 Taxon Influence Index: Assessing Taxon-Induced Incongruities in Phylogenetic Inference Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12186 Perelman P., Johnson W.E., Roos C. , et al. 2011 A Molecular Phylogeny of Living Primates. PLoS Genetics Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12303 Schenk J.J., Rowe K.C., Steppan S.J. 2013 Ecological Opportunity and Incumbency in the Diversification of Repeated Continental Colonizations by Muroid Rodents Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12329 Delsuc F., Tsagkogeorga G., Lartillot N. , et al. 2008 Additional molecular support for the new chordate phylogeny. genesis Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12411 D'angelo M.E., Dunstone M.A., Whisstock J.C. , et al. 2012 Perforin evolved from a gene duplication of MPEG1, followed by a complex pattern of gene gain and loss within Euteleostomi BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12416 Bick A.G., Calvo S.E., Mootha V.K. 2012 Evolutionary Diversity of the Mitochondrial Calcium Uniporter Science Submission Information Download Reconstructed NEXUS File Download NeXML File
S12622 Parrie L.E., Renfrew E.M., Mueller R.L. , et al. 2012 Zebrafish tbx5 paralogs are not functionally redundant in cardiac or pectoral fin development Developmental Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12669 Lemmon A.R., Lemmon E., Emme S. 2012 Anchored hybrid enrichment for massively high-throughput phylogenomics Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S12742 Crawford N.G., Faircloth B.C., Mccormack J.E. , et al. 2012 More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biology Letters Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S12826 Edrey Y.H., Casper D., Huchon D. , et al. 2012 Sustained high levels of neuregulin-1 in the longest-lived rodents; a key determinant of rodent longevity. Aging Cell Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1287 Pisani D. 2004 Identifying and Removing Fast Evolving Sites Using Compatibility Analysis: An Example from the Arthropoda Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1317 Weisrock D., Harmon L., Larson A. 2005 Resolving Deep Phylogenetic Relationships in Salamanders: Analyses of Mitochondrial and Nuclear Genomic Data. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13351 Lehmann J., Krauss V., Stadler P.F. 2013 Near Intron Pairs and the Metazoan Tree Molecular Phylogenetics and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13435 Kohl K.P., Jones C.D., Sekelsky J. 2012 Evolution of a MCM complex in flies promoting meiotic crossovers by blocking BLM helicase Science Submission Information Download Reconstructed NEXUS File Download NeXML File
S13451 Springer M., Meredith R.W., Gatesy J. , et al. 2012 Macroevolutionary Dynamics and Historical Biogeography of Primate Diversification Inferred from a Species Supermatrix PLoS ONE Submission Information Download Reconstructed NEXUS File Download NeXML File
S13511 Nozaki H., Yang Y., Maruyama S. , et al. 2012 A Case Study for Effects of Operational Taxonomic Units from Intracellular Endoparasites and Ciliates on the Eukaryotic Phylogeny: Phylogenetic Position of the Haptophyta in Analyses of Multiple Slowly Evolving Genes PLoS ONE Submission Information Download Reconstructed NEXUS File Download NeXML File
S13561 Zupan L., Cabeza M., Maiorano L. , et al. 2014 Spatial congruence between phylogenetic diversity of European vertebrates and implications for future conservation efforts Diversity and Distributions Submission Information Download Reconstructed NEXUS File Download NeXML File
S13654 Zhang G., Cowled C., Shi Z. , et al. 2012 Comparative analysis of bat genomes provides insight into the evolution of flight and immunity Science Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1366 Steppan S., Adkins R., Spinks P. , et al. 2005 Multigene phylogeny of the Old World mice, Murinae, reveals distinct geographic lineages and the declining utility of mitochondrial genes compared to nuclear genes Molecular Phylogenetics and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S13682 Joly S., Davies T., Archambault A. , et al. 2013 Barcoding in the age of ecoinformatics: the resource, the promise, and the challenges ahead Molecular Ecology Resources Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1372 Poux C., Madsen O., Marquard E. , et al. 2005 Asynchronous colonization of Madagascar by the four endemic clades of primates, tenrecs, carnivores and rodents as inferred from nuclear genes. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1373 Fischer W., Palmer J. 2005 Evidence from small-subunit ribosomal RNA sequences for a fungal origin of Microsporidia Molecular Phylogenetics and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S13746 Krenek S., Schlegel M., Berendonk T.U. 2013 Convergent evolution of heat-inducibility during subfunctionalization of the Hsp70 gene family BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13758 Chen Z. 2013 Characterization of Hairless (Hr) and FGF5 Genes Provides Insights into Molecular Basis of Hair Loss in Cetaceans BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S13870 Schlebusch C.M., Lombard M., Soodyall H. 2013 MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S13882 Vastermark A., Rask-andersen M., Sawant R.S. , et al. 2013 Insulin receptor-like ectodomain genes and splice variants are found in both arthropods and human brain cDNA Journal of Systematics and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S13909 Monier A., Sudek S., Fast N.M. , et al. 2013 Gene invasion in distant eukaryotes: discovery of mutually exclusive genetic elements and insights to marine diversity The ISME Journal Submission Information Download Reconstructed NEXUS File Download NeXML File
S13985 Aguilera F., Mcdougall C., Degnan B.M. 2013 Origin, evolution and classification of type-3 copper proteins: Lineage-specific gene expansions and losses across the Metazoa BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14096 Passamaneck Y., Martindale M. 2013 Evidence for a phototransduction cascade in an early brachiopod embryo Integrative and Comparative Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1410 Freitas T., Hou S., Dioum E. , et al. 2004 Ancestral hemoglobins in Archaea Proceedings of the National Academy of Sciences of the United States of America Submission Information Download Reconstructed NEXUS File Download NeXML File
S14188 Bossuyt F., Brown R., Hillis D.M. , et al. 2006 Phylogeny and Biogeography of a Cosmopolitan Frog Radiation: Late Cretaceous Diversification Resulted in Continent-Scale Endemism in the Family Ranidae. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14191 Hedtke S.M., Morgan M.J., Cannatella D. , et al. 2013 Targeted enrichment: maximizing orthologous gene comparisons across deep evolutionary time PLoS ONE Submission Information Download Reconstructed NEXUS File Download NeXML File
S14244 Nesnidal M., Helmkampf M., Bruchhaus I. , et al. 2013 Lophophorata monophyletic ? after all Submission Information Download Reconstructed NEXUS File Download NeXML File
S14287 Yin Y. 2013 DNA Barcodes Analysis for Species Identifications and Divergence Estimates of the Glires distributed in Xinjiang, China Molecular Ecology Resources Submission Information Download Reconstructed NEXUS File Download NeXML File
S14416 Grayson P.D., Civetta A. 2013 Positive selection in the adhesion domain of Mus sperm Adams through gene duplications and function-driven complex formation BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14426 Xu S., Yang Y., Zhou X. , et al. 2013 Adaptive evolution of the osmoregulation-related genes in cetaceans during secondary aquatic adaptation BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14480 Grant J.R., Katz L.A. 2014 Building a Phylogenomic Pipeline for the Eukaryotic Tree of Life ? Addressing Deep Phylogenies with Genome-Scale Data. PLOS Currents Tree of Life Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S1453 Poux C., Chevret P., Huchon D. , et al. 2006 Arrival and diversification of caviomorph rodents and platyrrhine primates in South America. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14693 He D., Omar F., Fu C. , et al. 2014 An alternative root for the eukaryote tree of life. Current Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14739 Wu X.Y. 2013 The evolutionary pattern and the regulation of stearoyl-CoA desaturase genes BioMed Research International Submission Information Download Reconstructed NEXUS File Download NeXML File
S1475 Rychel A., Smith S., Shimamoto H. , et al. 2005 Evolution and Development of the Chordates: Collagen and Pharyngeal Cartilage Molecular Biology and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14909 Scheel B.M., Hausdorf B. 2014 Dynamic evolution of mitochondrial ribosomal proteins in Holozoa Molecular Phylogenetics and Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S14911 Cho S., Valles Y., Weisblat D. 2013 Differential expression of conserved germ line markers, and delayed segregation of male and female primordial germ cells, in a hermaphrodite, the leech Helobdella Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S1496 Zeng L., Jacobs M., Swalla B. 2006 Coloniality has evolved once in Stolidobranch Ascidians Integrative and Comparative Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S14979 Cao L. 2014 Phylogenetic analysis of CDK and cyclin proteins in premetazoan lineages BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15062 Szabova J., Yubuki N., Leander B.S. , et al. 2013 The evolution of paralogous enzymes MAT and MATX within the Euglenida and beyond BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15064 Rodriguez-prieto A., Igea J., Castresana J. 2014 Development of rapidly evolving intron markers to estimate multilocus species trees of rodents PLOS ONE Submission Information Download Reconstructed NEXUS File Download NeXML File
S1515 Yoo M., Albert V., Soltis P. , et al. 2006 Phylogenetic diversification of glycogen synthase kinase 3/ SHAGGY-like kinase genes in plants BMC Plant Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1521 Ohkuma M., Saita K., Inoue T. , et al. 2006 Comparison of four protein phylogeny and detailed analysis based on glycelaldehyde-3-phosphate dehydrogenase sequences of parabasalian symbionts in termite guts Molecular Phylogenetics and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S15256 Di vietro L., Daghino S., Abb? S. , et al. 2014 Gene expression and role in cadmium tolerance of two PLAC8 containing proteins identified in the ericoid mycorrhizal fungus Oidiodendron maius Fungal Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15265 Li J., Zheng X., Cai Y. , et al. 2014 DNA barcoding of Murinae (Rodentia: Muridae) and Arvicolinae (Rodentia: Cricetidae) distributed in China Molecular Ecology Resources Submission Information Download Reconstructed NEXUS File Download NeXML File
S15281 Pozzi L., Disotell T.R., Masters J.C. 2014 A multilocus phylogeny reveals deep lineages within African galagids (Primates: Galagidae) BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15307 Humphreys A.M., Barraclough T. 2014 The evolutionary reality of higher taxa in mammals Proceedings of the Royal Society B: Biological Sciences Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15350 Padial J., Grant T., Frost D. 2014 Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria Zootaxa Submission Information Download Reconstructed NEXUS File Download NeXML File
S15368 Borras E., Albalat R., Duester G. , et al. 2014 The Xenopus alcohol dehydrogenase gene family: characterization and comparative analysis incorporating amphibian and reptilian genomes BMC Genomics Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15636 Vogeler S., Galloway T.S., Lyons B.P. , et al. 2014 The nuclear receptor gene family in the Pacific oyster, Crassostrea gigas, contains a novel subfamily group. BMC Genomics Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15642 Gu W., Li M., Xu Y. , et al. 2014 The impact of RNA structure on coding sequence evolution in both bacteria and eukaryotes BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15669 Ternes C.M., Schoenknecht G. 2014 Gene transfers shaped the evolution of de novo NAD+ biosynthesis in eukaryotes Genome Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S15682 Yan H., Lou Z., Li L. , et al. 2014 Genome-wide analysis of regulatory proteases sequences identified through bioinformatics data mining in Taenia solium BMC Genomics Submission Information Download Reconstructed NEXUS File Download NeXML File
S15721 Vicens A., Tourmente M., Roldan E.R. 2014 Structural evolution of CatSper1 in rodents is influenced by sperm competition, with effects on sperm swimming velocity BMC EVolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S15778 Bauer R., Garnica S., Oberwinkler F. , et al. 2015 Entorrhizomycota: a new fungal phylum reveals new perspectives on the evolution of Fungi PLoS ONE Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15931 Nabeel-shah S., Ashraf K., Pearlman R.E. , et al. 2014 Molecular evolution of NASP and conserved histone H3/H4 transport pathway BMC Evolutionary Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S15970 Schubert F.R., Sobreira D.R., Janousek R.G. , et al. 2014 Dact genes are chordate specific regulators at the intersection of Wnt and Tgf-beta signaling BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16144 Wallau G.L., Capy P., Loreto E.L. , et al. 2014 Genomic landscape and evolutionary dynamics of mariner transposable elements within the Drosophila genus BMC Genomics Submission Information Download Reconstructed NEXUS File Download NeXML File
S16177 Igea J., Aymerich P., Bannikova A.A. , et al. 2015 Multilocus species trees and species delimitation in a temporal context: application to the water shrews of the genus Neomys BMC Evolutionary Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S1619 Farwick A., Jordan U., Fuellen G. , et al. 2006 Automated Scanning for Phylogenetically Informative Transposed Elements in Rodents. Systematic Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S16190 Watanabe H., Schmidt H.A., Kuhn A. , et al. 2014 Nodal signalling determines biradial asymmetry in Hydra Nature Submission Information Download Reconstructed NEXUS File Download NeXML File
S16227 Li G., Jiang L., Ni J. , et al. 2014 Computational identification of a new SelD-like family that may participate in sulfur metabolism in hyperthermophilic sulfur-reducing archaea BMC Genomics Submission Information Download Reconstructed NEXUS File Download NeXML File
S16424 Derelle R., Torruella G., Klime? V. , et al. 2015 Bacterial proteins pinpoint a single eukaryotic root. Proceedings of the National Academy of Sciences of the United States of America Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S16426 Nery M.F., Arroyo J.I., Opazo J.C. 2014 Increased rate of hair keratin gene loss in the cetacean lineage BMC Genomics Submission Information Download Reconstructed NEXUS File Download NeXML File
S1647 Kullberg M., Nilsson M., Arnason U. , et al. 2006 Housekeeping Genes for Phylogenetic Analysis of Eutherian Relationships Molecular Biology and Evolution Submission Information Download Reconstructed NEXUS File Download NeXML File
S16716 Singh R.K., Gase K., Baldwin I.T. , et al. 2015 Molecular evolution and diversification of the Argonaute family of proteins in plants BMC Plant Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S16883 Tripathi A.K., Singh K., Pareek A. , et al. 2015 Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation BMC Plant Biology Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S17168 Huysman M.J., Tanaka A., Bowler C. , et al. 2015 Functional characterization of the diatom cyclin-dependent kinase A2 as a mitotic regulator reveals plant-like properties in a non-green lineage BMC Plant Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S17171 Huysman M.J., Tanaka A., Bowler C. , et al. 2015 Functional characterization of the diatom cyclin-dependent kinase A2 as a mitotic regulator reveals plant-like properties in a non-green lineage. BMC Plant Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S17236 Shen X., Liang D., Chen M. , et al. 2015 Enlarged Multilocus Dataset Provides Surprisingly Younger Time of Origin for the Plethodontidae, the Largest Family of Salamanders Systematic Biology Submission Information Download Reconstructed NEXUS File Download NeXML File
S17445 Claramunt S., Cracraft J. 2015 A new time tree reveals Earth history?s imprint on the evolution of modern birds Science Advances Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S17499 Dong Y., Zhang X., Xie M. , et al. 2015 Reference genome of wild goat (Capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication. BMC Genomics Submission Information Download Reconstructed NEXUS File Download NeXML File
S17613 Shi J.J., Rabosky D.L. 2015 Speciation dynamics during the global radiation of extant bats. Evolution Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S17743 Chang E.S., Neuhof M., Rubinstein N. , et al. 2015 Genomic insights into the evolutionary origin of Myxozoa within Cnidaria Proceedings of the National Academy of Sciences of the United States of America Link to Publication Submission Information Download Reconstructed NEXUS File Download NeXML File
S17761 Viana M.C., Menezes A., Moreira M.A. , et al. 2015 MECP2, a gene associated with Rett syndrome in humans, shows conserved coding regions, independent Alu insertions, and a novel transcript across primate evolution BMC Genetics Submission Information Download Reconstructed NEXUS File Download NeXML File
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